current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst MTSNKKIANNAANKIDINNKITNNHDIEKKKIKEKINDIEKKEIREITRIIRDVITQIFALFGADNFLVLFPRMDLKGFGYIPQLFFIKPKNELITRTYNTSCSKRPVINYYDRKAEYVSYNPVMTGEHISLNGGILTSLYKDMISLLKMTVFGNTMLRFDAHLVKEQLANRIQAQVPFSIYSPTFGLKELAVITSLSFKDTPFIDEVEVSLSIEIVKTFALEKYKGLast
1 -5.200[R] KOG2321 WD40 repeat protein  ali follow..  15  440.IVKERLEKQRASKIRSQNRPKVNAGLASRLSYQENKLRKKTGVTDGPSILED-----------ERFKNVFTDKEFE...................................................................................................................................................... 504
2 -4.970[S] COG2904 Uncharacterized protein conserved in bacteria  ali follow..  14  76..............GEISLNADSINLIESKSFKLYLNSFNQTIFADKESVRMTLQRDLAACAQGNVSVALYDLDEITG..................................................................................................................................................... 139
3 -4.850[UO] KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion  ali follow..  10  10..................................................................................AKVWLANERTFL----------------------KWLHVVVLLGSLALALYNSAGERLGQAFGVVYTLLAIFIGFYAWKLHAKRSQMIKSRSPAPMTDYWGPLI----ISLIVNMSFALKDAVYQNLIEPDRLLVKLFT...... 128
4 -4.590[S] COG5393 Predicted membrane protein  ali follow..  14  1MADTHHAQGPGKSVLGIGQRVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIPQYRLNAMIATTVVLLLLAKSTLLRHTRHELANDRQLLEEESREQ............................................................................................................... 134
5 -4.550[O] KOG4710 E3 ubiquitin ligase, VHL component (von Hippel-Lindau tumor suppressor in humans)  ali follow..  12  75.................................................................................................IFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYR---------LWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDISLYEDLEDHPNVQK... 196
6 -4.420[M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis  ali follow..  12  258...................................VVPLYDTPLSGINRLLKRAEDIVLASLI---LLLISPKLSSPG-----PVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQN----DPRVTRVGNFLRRTSLDELPQFINVLTGGMSIQYRQLIEGYMLRHKMKPGI--TGWAQINGWRETDTLEKMEKRDLEYIREWSIWFDIKIV.......... 450
7 -4.240[J] KOG4844 Mitochondrial ribosomal protein S27  ali follow..  17  4.........................................................................................................................................PKARLLKVAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHL--KTLYPDIEFVDLEE.................. 73
8 -4.230[R] COG2351 Transthyretin-like protein  ali follow..  20  53.............................................................................................................................................................................GEALQAGIYELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVALVSPWSYSTYRG 116
9 -4.160[S] COG3750 Uncharacterized protein conserved in bacteria  ali follow..  18  31...............................................................................................................................ERLEEEKKTIGDDIKEVYAELKGSGFDSKVVRTIIRLRKKEDHERQEEEAMLQLYMDALGM....................................... 91
10 -4.030[S] KOG3407 Uncharacterized conserved protein  ali follow..  22  85.......QPMVIDEIDITNLAPRKPDWDKRDASKKLERLERRTQKAIAELIRERLKL.......................................................................................................................................................................... 135

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.