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Query: gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLLLQYDFKIEFYNVDTSKKSPDGIPFAEEIPKIIINTQDGIHIDISISNVYSNIHTISSKQAKVVLWNLPLDFTDDIKFGDIVKIYYKKFAHEKNFDFIMAGTLGPPMSTDYPGGDFSVDLDVRLLTKSNFFNRELAGKEGKNFKGKTVKEAIESVFPNRNILNMDEKDCLKIIDKDIYATTPKEFIDKIKGTYVHNVIADIGTGLRGYECYLIFTNYIKKGENVHYEALEDYGLEFIPQQEITLGTTLKKNLIFWNAKTFFTHKLNVGDKVSFIDGLGKMIKTTIKETSARLSNTGECSLILKLEDDSNTKRKKLast
1 -4.660[S] COG2914 Uncharacterized protein conserved in bacteria  ali follow..  26  28...................................VTLQEGATVEIRASGLLELRTDIDLTENKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKE............................................................................................................................................................................................................................ 90
2 -4.640[R] COG3500 Phage protein D  ali follow..  12  13..............................KPIYRL-KVGDKDITGRFQDRLIGLTLTDNPGFEADQLDIELDDSDG-AKGVRLALS-----------------IGWADTGVVDKGTFKVD-RLTIRARSVELDGGLTTRRDNSYAGKTVGAIVQAIATRNKLMSMVSKKLAGQVIEHVDQTGESDA------AFLTRLAREFDAIATVKNGTLLFIP.................................................................................................. 188
3 -4.480[J] COG0361 Translation initiation factor 1 (IF-1)  ali follow..  15  12.................................TVLDTLPNAMFKVELENGHEILAHVSGKIRMNYIR---------ILPGDKVTVEMSPYDLTR............................................................................................................................................................................................................................. 64
4 -4.480[L] KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes  ali follow..  11  1.......MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADV-ICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYSGVGFYVKKDVAIP----AEEGITGILPVRGQKYSYSEAPEHEKIGFFPKDIDRK--TANWIDSEGRCILLDFQMFI---GVYCPVNSGENRLEYRRAFYKALRERIERLIKEGNRKIILDVNILCNPIDTADQKDIIRDLLLPSRLGLLLDIGRIQHPTRKGMF--------TCWNTRL--TRPTNYGTRIDYT--ATPDLLPWVQDADIEVMGSDHCPVYLDLKEEYEGKKLS 312
5 -4.260[H] COG4143 ABC-type thiamine transport system, periplasmic component  ali follow..  10  16..........................................................AFAKPVLTVYTYDSFAADWGPGPAVKKAFEADCN---ELKLVALEDGVSLLNRLRMEGK-NSKADVVLGLDNNLLEAATQTKLFAKSGVANEAVKVPGGWKNDTFVPFDYGYFAFVYDKSKLKNPPKSLKELVESDQKWRVYQDPRTSTPGLGLLLWMRKVYGDNAPQAWQKLAAKTVTVTKGWSEAYGLFLKGESLSYTTSPAYHIIEEKKDNYAAAEGHYLQVEVAARTVASKQPELAEKFLKFMVSPAFQNA... 274
6 -4.100[G] COG1109 Phosphomannomutase  ali follow..  12  2...........................................KSLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSEALKLALAKGLQDAGVDV-FATFHLGVDGGIEVTASHNYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLFGYINVKNLTKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT---RNAVIKHGADMGDRCFLFDEKGQFI................................. 261
7 -3.980[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  17  664............................EIRTTLIIKN---------IPNKYTYKMLVAKHKGDYDFLCLPTDFKNKCNMG---------------HAFI----------------NMVSPLHIVPFQQEKFNSGKVASLAYAEIQGK---SALASYMQTPSSMKEQKQLFPEVSYHD.......................................................................................................................................... 781
8 -3.870[T] KOG2124 Glycosylphosphatidylinositol anchor synthesis protein  ali follow..  12  11VLLLGSIFVIYFRSPLTPQKHLLYYGLEPPANRLVLIVTDGFRADSFFEENCRYVPNLRKIFLREGVVGVSRTRVPTETRPGHITLI----GLYEDPSAVLRGWKSNPIDFD-----FNRSSQTYAWGANDVLNLRFYNHDLDFSPGYDAYEEDEWVFKRVKLLLQQKREALQ-LDTAGHVHKPPKFRRTLEEKGVYAIYQEFERVFPDKRTAYLLTA--------------DHGMTDSGASRAVPKPGGRTFMPNNEGPAMPLHELEQAQLTPLMNNFGKLPLGYLNEAMAAHVNALQLLEQYVALQKQHKKG.. 351
9 -3.860[E] COG3232 5-carboxymethyl-2-hydroxymuconate isomerase  ali follow..  1..............................MPHFTMEYSSNLDGTVDFDGLCRAVHETILDTGLFELGAVRV-VADLLPQNGFIDMSFRSDEEKRKTGEAIFATVTEFLAPLFATPHFALTLEIREIDPQLSWKKNAIHPRLRQKQA......................................................................................................................................................................... 130
10 -3.860[J] COG1997 Ribosomal protein L37AE/L43A  ali follow..  16  2..................................................................................................................................................................................................................................................................AKKFTKKGRISRSAGRFGPRYGRKDRKLVADLEERMRAPHVCT............... 44

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.