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Query: gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNEDYEIYRMNQRLYGQALAQEDLKNWIYSNIFIIKIGTVKEFKHQTQEAIVTIPEFEDLEIHTKNISNISLELSKGDCVLLLQSSINIFDKNNDIHFDKHHFYILSAISPKTLNLISDTVKIRANNKIEIANQTTSLKKILDNIVSAINGIKIIGDSVIDESSLKIATAQINSDINSLFKLast
1 -6.420[S] COG4384 Mu-like prophage protein gp45  ali follow..  10  2............SLSKLAKKTAQTAKNIGETLRAAFRGKITLVVSSEPIQRVQLSGLAD-DLEHLQEYGFASHPPDGSEAVVIPGETAIFNHEGAKIVIKQ----IIEADCDVYRVNCKQYEVNAATDAKFNAPLVETSAVLTDVNQTGGSFNTDGDVVAGNISLRQHPHT.......... 209
2 -5.920[E] COG0832 Urea amidohydrolase (urease) beta subunit  ali follow..  13  6....................................................IIAAAGEIELNAGLETVSIEVANSGDRPVQVGSHYHFAETNPGLIFDRDAARGKRLDIPAGTAVRFEPGQTRQVTLIPLSGKRE............................................. 89
3 -5.680[R] KOG1382 Multiple inositol polyphosphate phosphatase  ali follow..  266....FELNAKGYSNICDIFSAAELIHYSYETDLTSFYQNGPGYKLIKSIGANLFNAVKLIRQSAHLDQKVWLSFTHDTDILNYLTTAGLIDDTRNHVPFRDHSYHRSWYIPQGARVYTEKFQCSNDSYVRY---------VVNDAVVPIESCSSGPGFSCEEGTFYEYAKDRLRGVS.... 434
4 -5.580[J] KOG3344 40s ribosomal protein s10  ali follow..  13  1...............................MLMPKKNRIAIYELLFKEGVMVAKK-KHPELADKNVPNLH--------VMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLR.................................................................. 80
5 -5.530[R] COG4540 Phage P2 baseplate assembly protein gpV  ali follow..  15  1..................MDTADLARLLQN---LLRLGTITDVRHSTPPAVRVRTG-TWRPWAERRAGRTRT-PTVGEQVLLFCPS------------DPANAVILCGIPTADNDVPSNDPNRHAAGLLTVQGVKTVFLEAAANVLVKAPNTTFDGDVTVKGRF................. 151
6 -5.490[S] KOG4147 Uncharacterized conserved protein  ali follow..  17  7.................................TITVRLIRSFEHRNFKPVVY--KYDALKIIHQKTNELVLSLEDDERLLL-ETEIAFFCEEDYKNYKAN................................................................................ 121
7 -4.990[A] KOG1784 Small Nuclear ribonucleoprotein splicing factor  ali follow..  18  3...................ATTGLETLVDQIISVI-VGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGE................................................................................................ 74
8 -4.930[A] KOG1774 Small nuclear ribonucleoprotein E  ali follow..  23  30......................RIQVWLYEQVNMRIEGCIIGFDEYMN---LVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS................................................................................................ 89
9 -4.860[L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair  ali follow..  11  35.............................................RERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKE-----ASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVK-----FLAKIASDMNK... 157
10 -4.740[K] COG1278 Cold shock proteins  ali follow..  21  1.................................MAETGTVKFFNTDKGFGFIKPEN-ADIFVHISAVQASGLGLTENQKV..................................................................................................... 49

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.