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Query: gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCDLRKTKLIDKISSLELYKYSIFFRNYIENVAEDCLKNGLILESAAHNVSEVELARLKVQLKNALLNCIISYRFHGIGYVLVKTKDTLIDLEQPVNIELPIGFEYLDYEYVRDLGVDFDHITYKVKSNNKNNSLDAVKIHKSRLIIYENFDYILKRYVPCYTESFLLDIYLFEKIYVEIERRIENHNFLFYKDESLVQLQDALSSATTSLSALTQSNNDRGSGILSSFLRKQNSNNHSKDISNLRNLNDSLSQELARLKSNLNNEGMFYTATPSASLEVIKYDLSYLKEALALIKAKIGADTKEPLTRSFNEQAKGLGNDGKGDRSNYYDFLKGVQEQVENSCNLKLTKYFGLDMKFNSLIMLSEEQKVERDIKLIELYSKYNQLIQSSSFNNEELAMLKEKLFSFLast
1 -5.4004lvq_A mol:protein length:376 Phosphate-binding protein PstS 3  ali model follow..  50.........................................TLKASGSTAQANAMTRFVNVFEQACPGQTLNYTANGSGAGISEFNGNQTDFG---GSDVPLSKDEAA-------------------QRRCGSPAWNLPVVFGPIAVTYNLN----------VSSLNLDGPTLAKIFNSITQ---------WNNPAIQALNRDFTLPGERIHVVFRSDESGTTDNFQRYLQAASNGAWGKGAGK-ARGNDGTSAAAKNTPGSITYNEWSFAQAQHLTMANIVTS-DPVAITIDSVGQTIAGATISGVGNDLVLDTDSFYRPKRPGPIVLATYEIVCSKYPDSQVGTAVKAFLQS--------TIGAGQSGLGDNGYIPIPDEFKSRLSTA................. 365
2 -4.9104b94_A mol:protein length:181 DUAL SPECIFICITY PROTEIN KINASE TTK  ali model follow..  10  1..............................................................................................................................................................................................................................................................................................................................GP----GPEDWLSLLLKLEKNSVPLSDALLNKLIGR---YSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR.... 78
3 -4.8604gmq_A mol:protein length:103 Putative ribosome associated protein  ali model follow..  12  1....................................................................................................................................................................................................................................................MGAAKNAVKKNKRVLRGSVKEANYFVEGEASAAIDAVLNDVDLVITKIDLAGKLNGLTVADEIKNVWKEEVSRLVGAGKLKEGDIKALV.......................................................................... 96
4 -4.8304h7x_A mol:protein length:161 Dual specificity protein kinase TTK  ali model follow..  1.....................................................................................................................................................................................................................................................................................................................GPLGSIMMMAN----NPEDWLSLLLKLEKNSVPLSDALLNKLIGR---YSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR.... 87
5 -4.8104eij_A mol:protein length:65 P protein  ali model follow..  18  1............................................................................................................................................................................................................................................QSVISANEIMDLLRGMDARLQHLEQKVDK-------AQGSMVTQIKNELSTVKTTLATIEGMMAT.......................................................................................................... 60
6 -4.7504xhc_A mol:protein length:543 Alpha-L-rhamnosidase  ali model follow..  11  90.....................................................................IIDFGSHYVGYLHFLCQSAGSPPDAPAHLQLTFG------ETLSEVCEPFSDYQGWLSSSWLQQCFRYLKVERKFRLQFTQIEVNAVTSASGACPAATTSDPQLRAIDNVAVLTLQNCMQEVFEDDRRLWLGDLRLQALVNDVTF--ARHDLVRRCLYLFAGHTREDGSAEDMATARELWPTARRQVELALTRCDASGVVWQASLNKQAAAQGVLIYCLQRAIWLAERQRLQQLKSAALDALWDPQQGFYVSGARRQVSWASQIWLVRREIMRNLEKNPPAVAMNTPYLRHHYIAALLQCGLRDEAIAQIKAYWGAMVDYGADTFWE........... 500
7 -4.5606db1_A mol:protein length:158 Putative methyl-accepting chemotaxis protein  ali model follow..  1.............................................................................................................................................................................................................................SNALSEVSEGNDIDRHLVRQMTVLSQGNDQY-----RFVTRLSRAMDVKIGGGTPDFAPARQSLENMRQKLEEMKALSPGPMNPDISREVLSNWQALLEKGQGSLTAWSEHASTVTPALSRAFGASAERFSHEAGAMLDNTRVMVDGKTYT................................... 156
8 -4.5402n5d_A mol:protein length:84 fusion protein of two PKS domains  ali model follow..  26  3....................................................................................................................................................................................................................................................................GSYTGAGEPSQADLDALLSAVRDNRLSIEQAVTLLTPRRGGDAKEILTR----------KDGGLDRAAAQALLAG........................................................................ 75
9 -4.5301pc3_A mol:protein length:350 Phosphate-binding protein 1  ali model follow..  11  28.........................................TLAETGSTLLYPLFNLWGPAFHERYPNVTITAQGTGSGAGIAQAAAGTVNIG---ASDAYL----------------------SEGDMAAHKGLMNIALAISAQQVNYN--------LPGVSEHLKLNGKVLAAMYQ----TIKTWD-----DPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPGFGTTVNGGMVTGCAETPGCVAYIGISFLDQANSSGNFLLPDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPIIN---------YEYAIVNNRQKDAATAQTLQAFLHWAIT-------GNKASFLDQVHFQPLPPAVVKLSDAL................. 344
10 -4.5004iox_A mol:protein length:286 Tripartite terminase subunit UL15  ali model follow..  14  50.......................................................................................................YVYVD--------------AFTANTRASGTGVAVVGRYRDDYIIFALEHFFLRALT-CVVHSLTQVLALHPGAFRGVRVAVEGNS----SQDSAVAIATHVHTEMHRL--LASEGADAGSGPELLFYHCEPPGSAVL--YPFFLLNKQKTPAFEHFIKKFN------SGGVMASQEIVSATVRLQTDPVEYLLEQLNNLTETVSVRTYSGKRNGASDD...................................................................................... 252

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 8 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.