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Query: gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDITKIKQEFDKKVAEIQALMKNPQQDSGLLSNSIDFRDQNLIFSNSGGVCTSSKDKIENYPAKGYPYKRGVKLSFGDGTTELEVEAGGGDDLYGVCSDIDEFSGMATVIPITNNFTGYLTLKKDGQNGVNPGDKLNFNQHGELEKVTGAQKSVNAIALSKAHKLTEDLFIVLASVFGNRAIKGLast
1 -9.7402bep_A mol:protein length:159 UBIQUITIN-CONJUGATING ENZYME E2-25 KDA  ali model follow..  12  3MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTERGEIAGPPDTPYEGGRYQLEIKIPETYPFN---KVRFITKIWHPNISSVTGA----ICLDIDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA.......................... 159
2 -8.6802e2c_A mol:protein length:156 UBIQUITIN CONJUGATING ENZYME  ali model follow..  15  1MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKVATLDGPKDTVYESLKYKLTLEFPSDYPYK---VVKFTTPCWHPNVDQSGN-----ICLDIENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLH.................................... 146
3 -8.6005ifr_A mol:protein length:151 Ubiquitin-conjugating enzyme E2 D3  ali model follow..  13  2.....PLGSALKRINKELSDLARDPPAQCSAGPVGDDMFHQATIMGPNDSPYQGGVFFLTIHFPTDYPFK---KVAFTTRIYHPNINSNGS-----ICLDISQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM........................... 151
4 -8.5904nrg_B mol:protein length:160 Ubiquitin-conjugating enzyme E2 N  ali model follow..  15  3LGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYHVVIAGPQDSPFEGGTFKLELFLPEEYPMA---KVRFMTKIYHPNVDKLGR-----ICLDIDKWSPALQIRTVLLSIQALLSAPNPGDPLANDVAEQWKTNEAQAIETARAWTRLYA............................ 156
5 -8.5905vnz_B mol:protein length:157 Ubiquitin-conjugating enzyme E2 N  ali model follow..  14  1.GPLGSMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYHVVIAGPQDSPFEGGTFKLELFLPEEYPMA---KVRFMTKIYHPNVDKLGR-----IKLDIDQWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA............................ 153
6 -8.5504fh1_A mol:protein length:153 Ubiquitin-conjugating enzyme E2 13  ali model follow..  11  1......MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYQVTIEGPEQSPYEDGIFELELYLPDDYPME---KVRFLTKIYHPAIDRLGR-----ISLDVTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE....................... 153
7 -8.5504onl_B mol:protein length:160 Ubiquitin-conjugating enzyme E2 N  ali model follow..  14  3LGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYHVVIAGPQDSPFEGGTFKLELFLPEEYPMA---KVRFMTKIYHPNVNKLGS-----ICLDIDKWSPALQIRTVLLSIQALLSAPNPDDPLVPDVAEQWKTNEAQAIETARAWTRLYA............................ 156
8 -8.4704whv_B mol:protein length:160 Ubiquitin-conjugating enzyme E2 N  ali model follow..  14  3LGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYHVVIAGPQDSPFEGGTFKLELFLPEEYPMA---KVRFMTKIYHPNVDKLGR-----IKLDIDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA............................ 156
9 -8.3604nri_B mol:protein length:156 Ubiquitin-conjugating enzyme E2 N  ali model follow..  15  5....SPEFGLPRRIIKETQRLLAEPVPGIKAEPDESNARYHVVIAGPQDSPFEGGTFKLELFLPEEYPMA---KVRFMTKIYHPNVDKLGR-----ICLDIDKWSPALQIRTVLLSIQALLSAPNPDDPLGNDVAEQWKTNEAQAIETARAWTRLYAM........................... 155
10 -8.3106cp0_B mol:protein length:149 Ubiquitin-conjugating enzyme E2 D3  ali model follow..  12  1......LAMALKRINKELSDLARDPPAQCSAGPVGDDMFHQATIMGPNDSPYQGGVFFLTIHFPTDYPFK---KVAFTTRIYHPNINSNGS-----ISLDISQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM........................... 149

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.