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Query: gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALKGNMQVENLEAVEDPQVDLGAQVSAAPRAKRQARQAEDVQGEDPYLESISELDDVLLKFKKYSKSMSSIENKVFSSSSGCFKSKNERVDAYSFACSSYTDKIEEYLYDPANSFPYKRGVKLVPKENSIYVEVGADTDMYGICVDVCEFSCTAYVLPITNNFEGYLVTRNPSIKIGEILDINNNGVIIKAGGGPPTAINIYALSDSFTINFAPEDGNQDQNRYPRQEYSINLIKVAIFGNRGLEKTVNPDGGLast
1 -8.3905irx_E mol:protein length:75 Tau-theraphotoxin-Hs1a  ali model follow..  21  15................................................................................................................................................CCDLDNFYCPMEFIPHCKKYKPYVPVTTNCAKEGEVCGWGSK.................................................................... 56
2 -6.7001nzk_A mol:protein length:143 Acidic Fibroblast Growth Factor  ali model follow..  12  8.....................................................................................................................YKKPKLLYCSNGGHFLRILPDGTVDG----TRDRSDQHIQFQLSAESVGEVYIK--STETGQYLAMDTDGLVRLEENHYNTYISKKHAEKNWFLGIKKNGSVKRGPRTHYGQKAILFLPLPV............... 137
3 -6.3805djo_A mol:protein length:174 Kinesin-like protein  ali model follow..  11  6..........................................MKAPELKEKLEESEKLIKELTVTWEEKLRKTEAIAQERQRQLESMGISLETSGIKVGDDKCYLVNLNADPALNYYLKDHTRVG-ADTSQDIQLFGIGIQPEHCEIDIAADGDITLTPKENAVNGTLVCSTTQLWHGDRILWGNN.................................................................... 155
4 -6.2003o12_A mol:protein length:221 Uncharacterized protein YJL217W  ali model follow..  10  31......................................................................................................................NKPKSVFQEAGKVTLETDEKTDFWR---GFTRDSGHFLGVETGSAFT------QVRVQGSYESLYDQAGIMVRIDDGHWLKAGIEISDGHAMLSSVLTNGKSDWSTAVGGNARDFWLRVTVEKG-VLRIQVSSDK. 161
5 -6.1905vob_C mol:protein length:171 Envelope glycoprotein UL128  ali model follow..  12  25................................................................................................VRAEECCEFINVNHPPERCYDFKFTVALRCPDGEVCYSPEKTAEIRGI------------VTTMTHSLTRQVVHNKLTSCNYNPLYLEADGRI-RCGKVNDKAQYLLGAAGSVPYRWINLEY---DKITRIVGLDQYLESVKKHKRLDVCRA...... 164
6 -6.1603mep_A mol:protein length:198 uncharacterized protein ECA2234  ali model follow..  14  1...............................................................................................................PEQNTWINRPEYSEVSEDRIVIVSDANTDFWE---DFSHYTGHVYGKETESDFT------QVRVKADFSALYDQAGIFIGGTETAWIKAGIEFNDGQPSIGCVVTNNNSDWSTGLPGNPGDFWMRVTSKSD-VIRIQYSIDG. 138
7 -6.0904lp7_A mol:protein length:254 Matrix protein M  ali model follow..  16  1........................................................................................................MESYLVDTYQGIPYTAAVQLLDQLKTLTITTLYAASQNGPILKVNASAQGAAMSVLPKKFE---VNATVALDEYSKLEFDKSKFVSSAKSVGKKTHDLIALCDFMDLE-ESESATVEAAISSEADQALTQAKIAPYAGLIMIMTMNNPKG 211
8 -5.9604j23_B mol:protein length:138 Fibroblast growth factor 1  ali model follow..  13  6.....................................................................................................................YKKPKLLYCSNGGHFLRILPDGTVDG----TRDRSDQHIQLQLSAESVGEVYIK--STETGQYLAMDTDGLLRLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPV............... 135
9 -5.8601qiu_A mol:protein length:264 ADENOVIRUS FIBRE  ali model follow..  16  4......................................................................................................................KKSSGLNFDNTAIAINAGK-----GLEFDTNTSESPDINPIKTKIGSGIDYNENGAMKLGAGLSFDNSGAITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCG-SQVLATVAALAVSGDLSSMTGTV. 134
10 -5.8501v1i_A mol:protein length:109 FIBRITIN, FIBER PROTEIN  ali model follow..  18  4......................................................................................................................KKSSGLNFDNTAIAINAGK-----GLEFDTNTSESPDINPIKTKIGSGIDYNENGAMKLGAGLSFDNSGAITIGNKNDDKGS...................................................... 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.