current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|11497098|ref|NP_051175.1| hypothetical protein (BB_P14) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MNKRNRDIDKAIASLDETRKKYFNLLDEIKNDKYYFPVIMNICSYDSVKKLPYDELLEVNRLAEIKLEKELYELILSKLast
1 -6.9703apt_A mol:protein length:310 Methylenetetrahydrofolate reductase  ali model follow..  19  169..KVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRR-----FTEVCGASIPGPLLAKL... 236
2 -6.8301zp3_A mol:protein length:304 5,10-methylenetetrahydrofolate reductase  ali model follow..  11  172..KVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKK-----FADMTNVRIPAWMAQMF... 239
3 -6.7902wsc_E mol:protein length:143 PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC  ali model follow..  14  87.........................VKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYAL.... 135
4 -6.6805ume_A mol:protein length:295 5,10-methylenetetrahydrofolate reductase  ali model follow..  13  173..KIDAGANHVITQFFFDIENYLRFRDRCASIGIDTEIVPGILPVTNFKQLQK-----MASFTNVKIPAWLVKAY... 240
5 -6.5605zji_E mol:protein length:136 Photosystem I reaction center subunit IV A  ali model follow..  16  81.........................VKILRRESYWYNGIGNVVTVDQDPNTRYPVVVRFNKVNYAGVSTNNYAL.... 129
6 -6.4305a1q_A mol:protein length:71 AF1502  ali model follow..  37  7.....................YKKLLDELKKEKIFLNKAMESLGYDDVDDSNYKEILSV-----LKMNKELREYV... 60
7 -6.1901jb0_E mol:protein length:75 PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV  ali model follow..  10  7.........................VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKV................ 43
8 -6.1303lw5_E mol:protein length:64 Putative uncharacterized protein  ali model follow..  12  9.........................VKILRKESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL.... 57
9 -6.1204xk8_E mol:protein length:64 Putative uncharacterized protein  ali model follow..  12  9.........................VKILRKESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL.... 57
10 -6.0505l8r_E mol:protein length:66 Putative uncharacterized protein  ali model follow..  12  11.........................VKILRQESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL.... 59

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.