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Query: gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSNKKIANNAANKIDINNKITNNHDIEKKKIKEKINDIEKKEIREITRIIRDVITQIFALFGADNFLVLFPRMDLKGFGYIPQLFFIKPKNELITRTYNTSCSKRPVINYYDRKAEYVSYNPVMTGEHISLNGGILTSLYKDMISLLKMTVFGNTMLRFDAHLVKEQLANRIQAQVPFSIYSPTFGLKELAVITSLSFKDTPFIDEVEVSLSIEIVKTFALEKYKGLast
1 -7.5402f1x_A mol:protein length:161 HAUSP/USP7  ali model follow..  10  1.................GSHMNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQVLKIINYRDDEKSFSR-----------------------------------------------------RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDKVTFEVFVQADAPGGSRAHSS 160
2 -6.6002h0e_A mol:protein length:121 Transthyretin-like protein pucM  ali model follow..  17  2...................................................................................................................SEPESLMGKLTTHILDLTCGKPAANVKIGLKRLGESIMKEVYTNNDGRVDVPLLAG---EELMSGEYVMEFHAGDYFASKNMNAADQPFLTIVTVRFQLALLSPFGYQVYRG 120
3 -6.4804z8m_A mol:protein length:169 TNF receptor-associated factor 6  ali model follow..  13  60.............................................................................................................................CANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLE...... 163
4 -6.4602f1y_A mol:protein length:159 HAUSP/USP7  ali model follow..  12  26..........................................TVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQVLKIINYRDDEKSFSR-----------------------------------------------------RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDKVTFEVFVQADLDAGVSEHS. 159
5 -6.4304jjq_A mol:protein length:159 Ubiquitin carboxyl-terminal hydrolase 7  ali model follow..  11  3.....................MTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQVLKIINYRDDEKSFSR-----------------------------------------------------RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDKVTFEVFVQADAPHGV..... 153
6 -6.1602f1w_A mol:protein length:158 Ubiquitin carboxyl-terminal hydrolase 7  ali model follow..  10  1.................GSHMNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQVLKIINYRDDEKSFSR-----------------------------------------------------RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDKVTFEVFVQADAPHGVA.... 156
7 -6.0402lu1_A mol:protein length:149 Subtilase  ali model follow..  23  20.....NLKNNHTSKQELILVLKGELDLHSKNMKNVINNAKKNLEKYFKEHFKEFDKISYDISTPINFLCIF----------IPTLF---------------------------------------DMNNMDLLKQALLILHNDLHEYVENWSFSSTYHTYEADYIKEQ........................................................... 133
8 -5.9504gjh_A mol:protein length:178 TNF receptor-associated factor 5  ali model follow..  14  59.............................................................................................................GYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL--DQSGKKNHIVETFKAD-PDGEMNIASGCPRFVSHSTLENSKNTYIDTLFLKVAVDLTDLEDL..... 178
9 -5.6904wce_S mol:protein length:217 50S ribosomal protein L25  ali model follow..  14  21...........................................................................LRKSGKVPAVVY--------TKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKV-----------MVADYQFDPLKNQITHID--FLAINMSEERTVEVPVQLVGEAVGAKE-VDITELNINDSLTVADVKVTGDFKIE.......... 168
10 -5.5704jxq_A mol:protein length:186 Acetyltransferase  ali model follow..  14  1..............................SMTATLRDAVAADLRSITEIYRESVLNGVATYEETSEAEMALRFSTITGNGYPYVVALDERGAVIGYAYASAFRNRTAYRFLVEDSIYLSPE--------ARGKGIGKALLSELVGRCTALGFRQMIAVIGGHPSSIALHRA-------------LGFELQGLMKATGFKHGRWLDTAFMQRPLG............ 167

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.