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Query: gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221), from B.fragilis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPTIKKVQPVKVVAPFLNSQSESPVPLDALTDQEKVSDLYFLKGTVHQIAKPYLSINNCTFKQQIFSECQFKSAQLTDVRFENCDLSNVSFAGTTFYRVEFISCKLLGTGFLEATLNHVLMDHCYGQYINLSMVKMRTARFSHCNFRNGSLNDSKLMPAAFDTCELLEADFSHTSLKGIDLRNSRIAGIQLNIADLKGAIVSSLQAIDLLPLLGVKIEDDLast
1 -49.700[R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats  ali follow..  16  138.............ETPLGDRPLTRNDVIKAIIQTSVITELRFQGVNLSGADLRKLDFRNINFKYANMSHCNLSHTNLNYCCLERADLQYANLECAQLVSVRGLCANMEGANLRGCNFEDPTGVRTNLEGVNLKGACLESSNMAGVNLRVANLKNANMKNCNLRAAVLAGADLEKCNLSGSDLQEANLRGANLKDAELTLMVTPL................. 328
2 -41.000[S] COG1357 Uncharacterized low-complexity proteins  ali follow..  11  49..RNLQSNYQCSIHKDLREKGFRGCSAYECFGAGQKVSQITYEGKDWRNSPETANQMFDVFPEALSIDIAKPIHSELRTTFEKIERLTRLSKERLLTLQVDEHRAEVNEWLLKTSELVRAQARHPKLPKKVSRGSVLIGAKLKGLDLRGANLRGALLIAADLRNADLRMTDFIGADMRDADLSGADLTGSILTQAQVNAANGDSNTKL............. 268
3 -8.970[R] KOG3665 ZYG-1-like serine/threonine protein kinases  ali follow..  109................................RTSQIDHLDLSGRSFSTAWLKTTGQQLPLLRTLNVSGVKLLNPDFFQFCKSFPNLYSLDISNCGVTILT----NLRHLSLRSLIYESWYDIRELFALKLLNVLDLSMHSTHHARRNMQRFLDCKQVLPELRFLECSGNLMDEDMLEELLITHSHLHQLAIVDCDVKAPKSSPIRILSCTTF........ 292
4 -7.240[O] KOG2120 SCF ubiquitin ligase, Skp2 component  ali follow..  11  182....................RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSFSEFALQTLLSSCSRLDELNLSWCDFTEKHVQVATITQLNLSGYR---KNLQKSDLSTLVRRCPNLVHLDLSDSYLQHLSLSRCDIIPETLLEPTLKTLQVFGIALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCR.. 415
5 -7.090[Z] KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain  ali follow..  58........................................VTGVLSLSGRKLREFPRGAANHDLTDTTRADLSRNRLSEISLENLNLYQNCIRYQALTFLNISRNQLSTLHLCNLPLKVLIASNNKLVSLPEEIGHLRH--LMELDVSCNEIQTEALRDLNVRRNHLVHLELAELPLIRLDFSCNKITTIPVCYRNLRHLQLDNNPLQSPPAQIC...... 261
6 -6.980[R] KOG1947 Leucine rich repeat proteins, some proteins contain F-box  ali follow..  378.............................................QMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGL-LTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNRMEE......... 543
7 -6.770[T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats  ali follow..  10  7.............................................LLLGVVLMAGPVFGIPSCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHLFELRLYFCGLSDAVLKDGYFRNLALTRLDLSKNQIRSLYLHPSSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 206
8 -6.120[S] KOG4308 LRR-containing protein  ali follow..  11  748..........................LSEELTKYKIVTYLGLYNNQITDVGARYVT-ECKGLTHLKLGKNKITSKYLALAVKNSKSISEVGMWGNQVGDEGAK--AFAEALRNHPSLTTLSLASNGIS-KSLARALQQNTSLEILWLTQNELNDESLAEMLKVNQTLKHLWLIQNQITAAQLADALQSNTGITEICLNGNLIKPEEAKVYEDEK....... 948
9 -5.860[T] KOG0531 Protein phosphatase 1, regulatory subunit, and related proteins  ali follow..  13  91.................................................................YSDRLSLERQKLTVCPIIN-HLRLLNFQHNFITRIQ----KLISLDLYDNQIEEIS---RCLRVLLLGKNRIKKIS---KSLDVLDLHGNQITKIELRVLNLARNFLSHDSLTELNLRHNQITFVR-NLPCLQHLFLSFNNISSFDSVSCLA.... 266
10 -5.770[O] KOG3207 Beta-tubulin folding cofactor E  ali follow..  201..................................DSCKKLVISECNLSENSIDSILLRFPSTSDVVAFGNDLTRFSVSEAVSSR--LTSLDLEDNPFKTLD----NLTQLSVANCGITSLNGFDGSIKFPKLEYLNIKRNSIVEWKSVNSIRSLKSLKRLLFDCKKLSTIDLNRFDVSEVERRSAEIRFLN-KYAGLNDNEDHQDDIKRLIEIHG...... 398

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.