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Query: gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388), from B.fragilis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIIRTILDTDLYKFTTSYAYIKLFPYAIGTFSFKDRDGTEYSDEFVERLRTEISQLSHVALTEKELEYMIKNCRFLPRVYWEWLSSFRFQPEKIEIRLDENRQLHIEVNDYLYKATLYEVPLLAIVSEIKNQSSGNVANLEDILYKLSEKTELSNKHQLLFSEFGTRRRFSFDVQNQVIGHLKQTAHYCIGTSNCHFAMKYGMKPMGTHPHEWFMFHGAQFGYKHANYMALENWVNVYDGDLGIALSDTYTSAIFLSNLSRKQAKLFDGVRCDSGDEFRFIDQLTARYKELGIDPTTKTIVFSNALDFDKALDIQEYCQGKIRCSFGIGTNLTNDTGFKPSNIVMKLSQCKMNMNQEWRECVKLSDDIGKHIGSPEEVRACLYDLRLELast
1 -89.700[H] COG1488 Nicotinic acid phosphoribosyltransferase  ali follow..  20  12.DDSLTLHTDLYQINMMQTYFELGRQRQAVFEVFFREPFKNGYAVFAGLERMVDYLKNLKFSETDIAYLRELDYP--EDFLNYLKELRFTGTVQEGQLAFANEPLVQVEGSLAECQLVETAILNIINFQTLIATKAAR-------------IKSVIGDDPLLEFGTRRAQEMDAAIWGTRA--AIIGGADATSNVRAAKIFGLKASGTHAHALVQSYGNDYEAFKAYAQTHKDCVFLV---DTYDTLRVGVPSAIKVAREFGDKINFQGVRIDSGDMAYISKKVRQQLDEAGFTD--AKIYASNDLDENTILSLKMQKAK--IDVWGVGTKLITAYDQPALGAVYKLVSM-EDESGQMQDTIKLSSNAEKVPGKKQVWRITKKA.... 376
2 -87.900[H] KOG2511 Nicotinic acid phosphoribosyltransferase  ali follow..  16  43..LVQPLLTDFYQITMCYAYWKTGHNEPAVFDVFFRKPFQGEFTVFAGLEDCLRFVENFKFSQSDIDYVKKILPEAEPEFYEYLETLNGSHAVAEGSVVFPKVPLLTINGPLAMCQLIETSILNLVNYASLVA------------TNAARFRQASGWKIQLLEFGLRRAQGPNGGLTA--SKYCYIGGFDATSNVLAGKLYGIPVKGTQAHSFICSFSSPAELSDGELSAFVAYAIAFPDTFLALIDTYDVIRSGVVNFVADLGYRSMGCRIDSGDLSYLSKELRECFVKVSTLKGEYSIVASNDINEETIMSLNDQQHE--INAFGVGTHLVTCQKQPALGCVYKLVAQ------SAQPKIKLSQDVTKITGKKKCYRIFGKN.... 463
3 -10.300[H] COG0157 Nicotinate-nucleotide pyrophosphorylase  ali follow..  12  16.LLRGWLLEDIGRGDRTTNGLLAADVTLGSAKWIAKTP-----GVIAGLPVAARVFQLLN------------------------EKVSFVTTVDEGAFCEPGQVVAEIHGSLDALLMGERVALNLAMGLSGIATLT-----------KIYVEKIADLPACLVD--TRKT----------------------TPGLRLLEKYATAMGGAINHRMVMIKDNHIAAAGGIGKAITRIRSQIPYTLTIEVE------ETIEQVKEALEYKADIIMLDNMPV----DLMRQAVQLIRQQDNGVKIEASGNVTLETIRAVAETG----VDYISSSA-PITQS--KWLDLSMRIT........................................ 287
4 -4.820[K] KOG3341 RNA polymerase II transcription factor complex subunit  ali follow..  11  1.....................................................................................................................................................................MRRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKMEVFRVKLEEFAMKHKEDIRKNSQFRKQFQEMCAAIGVDPLATFWSVLGMGDFYYELGVQVVEVCLAANHKTGGLMELDD-LRRRLIAARGQSSVHQEITKEDI-LMAAKKLSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGCVTQSQLIKDLGWTDYRAQQSLDKVLGEGL. 224
5 -4.490[E] KOG2844 Dimethylglycine dehydrogenase precursor  ali follow..  527........VGLMDMSSFSKYDITGEDAVEYLQFLCSANPIGTTVYTGMQHQKGGYVTDCTLSRGEKKFFMVAPTIQQERVLVWMKKQAILKARVHVQDVTGAYTALDLIGPSSRYLMGDITGLSMSSNDFPTFRCQEINIGMATGIRAISVTHCG-------ELGWVIYVPNEVAQNVYEKILD------------AGKEYSLQHAGYYTLRQLR----IEKFYVYWGQDINATVTPVECGRLFRVDDFIGKKALEEQVERGVSKRFVQLLVDGHDK-----------ETDPWPQGGETILKDGRA---------------------VG-LTTSAAYGFTLGCQVCIGYVENKEFGVSPEFVSSGHFEIDIAGKRFTCRLNVH..... 853
6 -4.460[R] COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily  ali follow..  1...............................................................................................................MPSAILKGVCMVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQ---AIRIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATW............................................................................................................................................................. 118
7 -4.410[Q] COG2124 Cytochrome P450  ali follow..  121.................................................HLQLRREHMPYFTPSYLRGLTERVKGEVTRLLDEMEPLLANGAEIDMVEHFSSVLPLFTLCEILKFLTWMHYLERAQDLAVKQANAPMQPTLELMQFVMDFNNNVEEMFEYGRTMLHKRREDPK-EDLMTAIARAQLDGAVLPDEYLDGSWLLIVFAGTTRNTLSGAMRLLTE-FPDQKQKLIADPSLLGGAVDEFIRMVSPVVYMRRTATRDV--EVNGQLIREGE------KAIMYYGAANRDPAM--------FENPDQLDVTRANAGKHI-AFGYGPHTCIGKRVAQIQLEEAYRQILAR------PDLNWTGNIEIAPN............... 430
8 -4.230[T] KOG4825 Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa)  ali follow..  1................................................MPHKIGF---VSSSGHEDGFSARELMIHAPTVSGWRS---------PRFCQFPQEIVLQMVER-------RIRKLQLLAHQYMISSKIEFYIAPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDAVGQFLKLIFHQNHVNKYNIY--NQVALVAINIIGDPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARDMYQDPEVAQIIRKLDERKREAVQKERYDYAKKLKQAIADLQKVGYEVEKRCAVEKEDYDLAKEKK........................................................................... 273
9 -4.220[S] COG5440 Uncharacterized conserved protein  ali follow..  6..IKKWLDEEGFLR-------MEVPDENARFHYVVNYPEDHVIDIIAGKDDMILIACATSVSPEHQAGIRALSMEKRTEFIWKVRTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVMWMIQERFGEERPE.............................................................................................................................................................................................................................................. 149
10 -4.200[KL] KOG4086 Transcriptional regulator SOH1  ali follow..  11  17................................................FEIELEFVQMLS-NPWYLNFLAQHKYFEDEAFLQYLEYMEY-------------------EPEYVKFIIYPTCLLTLLKNPQFRNDISRADLSKQVNDEI................................................................................................................................................................................................................................................ 100

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.