current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117), from B.fragilis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MADVKEKINLLDVIPFRSENITAEKGSDGTVTIAFPRFKYEWMRRFLLPKGMSADIHVRLEDHGTAVWELIDGKRTVRRIIEELAEHFNYEENYESRITAYITQLQKDGFVKLVIENLast
1 -35.600IDP06550 set218a-004 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  14  1.........................MQKTSIVAFRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILGLVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLKIACQQKWITCREPE 92
2 -6.840IDP00031 gene: blaI; penicillinase repressor BA_1078 [Bacillus anthracis str. Ames]  ali follow..  21  14.............................................................EIMKVLWLK--SPQTANEIIEELEDPMDWKPKT---IRTLINRLVQKEAVSYHQDK 64
3 -6.680IDP00113 gene: blaI; PENICILLINASE REPRESSOR NT01SAA0015 [Staphylococcus aureus subsp. aureus N315]  ali follow..  19  14.............................................................DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKT---IRTLITRLYKKEIIKRYKSE 64
4 -5.450IDP01668 hypothetical protein GBAA0060 [Bacillus anthracis str. `Ames Ancestor`] GBAA0060 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  10.....................................................QGKVTGITNFGAFV---LTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKK 75
5 -5.070IDP01032 gene: yhgG; putative cytoplasmic protein STM3507 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  19  1........................................................MASLIQVRDLLAL--RGRMEATQISHTLHAP-------QPMIDAMLNQLEIMGKAV..... 47
6 -4.990IDP00724 gene: arsR; arsenical resistance operon repressor SACOL1822 [Staphylococcus aureus subsp. aureus COL]  ali follow..  10  15............................................................DSSRLEILDLLCGELCACDLLAHFQFS-------QPTLSYHMKALVKTNLVTTRKI. 64
7 -4.770IDP91008 gene: sodB; superoxide dismutase [Yersinia pestis KIM 10] y1951 [Yersinia pestis KIM10+]  ali follow..  14  19..........LPALPYAQNALE--HISAETLEYHYGKHHNTYVINLNNLIKDTEFAGKSLEEI-TFYWHCLGGGEPTGKIAEAINKSFGSFAEFKAQFTDAAVKNFGAGWTWLVKKA 144
8 -4.720IDP01507 superoxide dismutase, Fe VC2045 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  5..........LPALPYAKDALE--HISAETLDFHHGKHHNTYVVKLNGLIPGTEFENKSLEEI-TFYWHCLGGGEPTGAVAEAINAAFGSFADFKAKFTDSAINNFGSSWTWLVKKA 130
9 -4.680IDP93833 DNA-binding transcriptional repressor ArsR [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007538 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  15  14............................................................DETRLGIVLLLMGELCVCDLCTALDES-------QPKISRHLAMLRESGLLLDRKQ. 64
10 -4.640IDP01476 superoxide dismutase, Mn VC2694 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  22..........FPDLPYAYDALE--YIDTKTMEVHYSKHHRTYYDKFLSAIKGTEHEDRPLSEI-IVYWNCMAGGEPQGELAAEIERQFGSFAQFKEAFSQAAVNTFGSGFVWLIVQQ 150

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.