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Query: gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110), from B.fragilis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADYPINRGIGKPVEFKGLKSQYLFIFAGGLLALFVLFIIMYMVGINQWVCIIFGVTSATLLVWLTFRLNEKYGTHGLMKLSARKSHPFHIINRKAISRLFTKNQKQASKLast
1 -6.060IDP02016 hypothetical protein YPO0252 [Yersinia pestis CO92] YPO0252 [Yersinia pestis CO92]  ali follow..  20  7.......QEIEDNPRFQELRSRFAWLLSLITLTMYVAFIFLLGTPIYTGSSVTRGIPVGVGLIVTSFILTGIYVIRA................................. 86
2 -5.920IDP01509 oxaloacetate decarboxylase subunit gamma VC0549 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  12LSAKNVHKPKNVRMTRKGSNMTHI----GSLLLDAATLMVTGMAVVFLFLTLLVYLV..................................................... 64
3 -5.570IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  11  1MA--KLLKAMKRPAALWGVP----------MVPLLAVTGVTIIVAVWTSVALLFLLPVEFLVMKSLTRNEPMRFNLIAVWLRVKGKPVANRLFGATTLMPVEHEAVDIKE 98
4 -5.480IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  10  7............KLAVSNLIKNYYPFALAVLLAVTITYLFYSLT-IQATLGFGMFVVTLASAIIVLYAMKNRSKELGIYGMLGLEK........................ 99
5 -5.280IDP00194 putative membrane protein YPO0983 [Yersinia pestis CO92]  ali follow..  12  124.....VFAPISEEIIFRGFLLNAGIGFGLAVVITSLLFALVHTQYLYTFVSLFVFSAILCEVRIRTGSLLMPMVLHSANNIAS........................... 208
6 -5.250IDP00174 putative membrane protein YPO1140 [Yersinia pestis CO92]  ali follow..  14  179.....FFVCLAEEALFRGYLQQRLG---PALVITALLFGSAHFAGGPLLM---LFAALAGVIYGLAWLWSGRL..................................... 246
7 -5.150IDP91515 gene: malG; maltose transporter permease [Vibrio vulnificus CMCP6] VV2_1587 [Vibrio vulnificus CMCP6]  ali follow..  17  105TSAYAFAR-----LRFKGKETILKAMMIFQMFPAVLALVALYALGLNTHGGLIFSYLGGIALHVWTIK.......................................... 178
8 -5.030IDP05290 gene: sugE; quaternary ammonium compound-resistance protein [Clostridium difficile 630] CD0488 [Peptoclostridium difficile 630]  ali follow..  46.........LSLALKHLPLGTSYAIWTGIGTVGTAIVGMAILNEPISISRIACIGFIVVGIVGLKL............................................ 102
9 -4.730CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  19  833......ERNIVKDLKRLENKINVIICLVVVILAVLLLVTVLSILHIGM.............................................................. 874
10 -4.420IDP93853 secretion system effector protein SseC [Yersinia enterocolitica subsp. palearctica Y11] YP_006007025 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  18  137....QIDKAVEQA---KAKKAGIF-----TAVFDWIVGAVEVVYGA---LKVAEGVLTGDPLAIASGVAYLAAGTAGLVKAAAET......................... 207

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.