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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -6.240IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978]  ali follow..  13  465...................................................................................................................AQKTVKLMFSNTGKQAAVFHVYNRLDLTVIPRRYMVEAGKQDVWNTTNGQYDLWVLGPNGFHRAFKGNLSQANQTQDANLYLKVRHDGNKSVKLNVKANAYLPNKTWMIETNSSEKELVWD--------------MSEFGGWYDFTVTLADDATFSRRFAGRIETQE............................. 631
2 -5.950IDP05362 conserved domain protein [Bacillus anthracis str. Ames] BA_1821 [Bacillus anthracis str. Ames]  ali follow..  11  21..........................................................................................................................SAYTFQSLPTASKSKQWYIEIDKSHSTNKQAVQTKQGVYDTYNLLVKNIGNNVSVEILDNTPVSKATI---------NPITLNNNVSKSHTSSDYMAFPLDPNSHNFKVIITWEE-----KNFSYNGHPVNESKQMKETFVFNEE............................................ 154
3 -5.950IDP02342 putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0737 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  24................................................................................................................ALLSGGKFTHGTSGTIH-TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQK-------------DASKIDGALN----RGNNNIFLVNPGKTGTITAGKFVASTTALSDD............................................................................... 134
4 -5.780IDP00027 tellurium resistance protein BA_0400 [Bacillus anthracis str. Ames]  ali follow..  13  1..................................................................................................MASISLKKGQKVDLT--DVSIFLVGANGKVSGAEDFKGANGAVEHLGDNRTGEGEGDDESIKVDLKNVPAHIERICFTITIYDGEGRSQNFGQVSNSFVRILDEEKNAELIRYDLGEDFSIETAVVVGELYRHAGEWK---FNAIGSGFQGGLASLCNNFGLDVE................................................ 194
5 -5.620IDP00438 gene: terE; tellurium resistance protein YPO0299 [Yersinia pestis CO92]  ali follow..  13  2....................................................................................................AVSLVKGGNVSLT--DASVFMVGENGKVLSDQHFVSPCGSVVHQGDNRTGAGDGDDEQIKIDLKKVPADVKKIIFSVTIYDAEARKQNFGMVSNSFMRVVNEDNSAEIARFDLSEDASTETAMIFGELYRNNDEWK---FKAVGQGFAGGLSALASQHGVSV................................................. 191
6 -5.500IDP02139 gene: gmk; guanylate kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4009 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1.....................................................................................................MRSRRGLLIVLSGPSGVELFSHEDTRFQYSISVTTRKREGEVDGVDYFFKEREEFEEMIRNEKLLEAEFVGNYYGTPIDYVEKTLQE--VQGAIQVKKAFPEGVFIFLAPPSLSELKN-RIVGRGTETEDVI----------ENRLTVAKEEIDMMDAYDYVVENDQVEL........................................ 175
7 -5.390IDP06283 gene: gmk; guanylate kinase [Streptococcus pneumoniae TIGR4] NP_346174 [Streptococcus pneumoniae TIGR4]  ali follow..  15  9....................................................................................................VFSGPSGVGKGTVR---REIFESSENQFQYSVSMTTRARPGEVDGVDYFFRTREEFEELIRQGQMLEAEYVGNYYGTPLTYVNETLDK--VQGALQVKKKVPDAVFIFLTPPDLDELQD-RLVGRGTDSAEVI----------AQRIEKAKEEIALMREYDYAIVNDQVPL........................................ 174
8 -5.360IDP06121 gene: gmk; guanylate kinase [Helicobacter pylori J99] NP_223024 [Helicobacter pylori J99]  ali follow..  12  9....................................................................................................ILSGPSGAGKSTLT----KYLQEKIPKTHFSLSTTTRKREGEVDGLHYNFVSEEEFKQGIEKGQFLEAIVHNHYYGTSKIPVEKALKE--VQGHEILKKHYPNACSVFISTKNQEILKE-RLLLRGTDSKETI----------EKRLINAYKEMQCLESFDYLIINEDLEK........................................ 173
9 -5.360IDP01611 gene: gmk; hypothetical protein lmo1827 [Listeria monocytogenes EGD-e] lmo1827 [Listeria monocytogenes EGD-e]  ali follow..  16  9....................................................................................................VLSGPSGVGKGTVR---EAVFKDPETSFDYSISMTTRLREGEQDGVDYYFRSREVFEQAIKDGKMLEAEYVGNYYGTPLEYVEEKLAA--VQGAMQVRKAMPEGIFIFLTPPDLSELKN-RIIGRGTESMEVV----------EERMETAKKEIEMMASYDYAVVNDVVAN........................................ 174
10 -5.120IDP90539 gene: gmk; guanylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2708 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  30....................................................................................................IVSAPSGAGKSSLIAPTYAMKVSVSHTTRGM-------RPGEQDGVHYHFVEKEHFIELIGKGEFLEAEVFGNYYGTSRVWIENTLNK--WQGARQIRSQMPEAKSIFILPPSKEELER-RLNTRGQDSDAVI----------AKRMGEAKSEISHYSEYDYVIINDDFDV........................................ 196

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.