current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447), from B.fragilis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .
# Score Template Links and tools%idFirst MQGIKNLTQGPINKQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAVGSVGILTWMSGSISLLNKVGSEVSVGQSIGAQNHEDARNFASHNITIALIISLCWGGLLFLLARPIIGIYELEAHITENAIAYLRIISTGLPFIFLSAAFTGIYNAAGRSKIPFYISGTGLVLNILLDPLFIFGFGLGTNGAAYATWISQAAVFGIFIYQLRCRDALLGRFSFFTRLKKKYTHRILKLGLPVATLNTLFAFVNMFLCRTASEQGGHIGLMTFTTGGQIEAITWNTSQGFSTALSAFIAQNYAAGRTDRVIKSWHTTLLMTSIFGTLCTLLFVFFGNEIFALFVPEQAAYEAGGVFLRIDGYSQLFMMLEITTQGVFYGIGRTIPPAIISITCNYMRIPLAILFVRMGMGVEGIWWAVCVTTVAKGLILAGWFALIKRKVLSRPILLast
1 -95.300IDP05138 putative drug/sodium antiporter [Clostridium difficile 630] CD2874 [Peptoclostridium difficile 630]  ali follow..  20  1MENQEALRHEKIWILLFRYSIPAIIAMMVTSLYNVVDRAFIGSIGSIAIAGLGVTMPVFTLIIAFGMLVSVGASTRLSIKLGERNREEAEKILGNALTLSIIISLIITILGLVFLEDILFILGASKDSIFYAKDYMSVILVGSIFNLVAFSLNNAIRAEGNPKLAARTMIVGCVLNLILDPIFIFVFNLGIKGAAIATVLCQIVVFFWVIHYFIRGKSNLKLKKCNLKLNKDIVKKVFAIGMTPFAMEVAISITHMFTNNSLKVYGGDLAIGAMTALTSILLMFMMPVFGLNQGMQTIISYNYGAKQYERAKKTLILSIIVSVVILSFGFLVVQVFPEVFVGIFNKDSDLMDIAVRGISLNLITLPIMGISIVGPVYFQCISKVKHSMFLTLLRQFILFIPLIIVLPIQFNLDGVWLAQPVADFIAMIIVLLFLKREFKTSR..... 445
2 -88.400IDP05294 putative drug/sodium antiporter [Clostridium difficile 630] CD1418 [Peptoclostridium difficile 630]  ali follow..  19  3.TKISINENMSLGKRFFKYLAPSVVAMWVFSLYTMVDGIFVSKVGELALAAVNISMPFINFIFAVSLLFSTGASTIIAIYLGKKDIKSANEVFSFNLVSIIILSIIILAITFFNLDRLALFLGATESTIGMVKDYLGIIIFFNGFFIVSYSLEVIIKTDGFPILATVGVIISALTNIILDYLFVIEFGWGVKGAGIATGLSQVFSTIFFLIHFLRKNSTLNF--SKFRIDFKTLRKIVFIGFPDSTTELSCGIVVLLFNLSLTKYIGENALIYYSVINYINTLVLMTMMGITQGMQPLTSFYYGAGNIDNVKKLLKMGIKATIIASVAVFAICMAFSGPIVSLFIEETMLFNEGVRVFKIFSISFLLVGINVIISGFFVSVEKPSISTVISLGRGLVIVVLSLISMILIFGGQGIWMTTIVSEFICLILSLVFLKKNFSTLDSNL.. 447
3 -4.600IDP02293 gene: trxA1; thioredoxin [Francisella tularensis subsp. tularensis SCHU S4] FTT1445 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  1MSKCIDISDSQFESEVVNSDIPVLLDILDQVTEHYGDKIKVCKINIDDNEETAMKFGVRGVPTLMVF-----DGENKETKVGVVQKTQLISIVDKYL.............................................................................................................................................................................................................................................................................................................................................................. 107
4 -4.470IDP91323 hypothetical protein VV2_0301 [Vibrio vulnificus CMCP6] VV2_0301 [Vibrio vulnificus CMCP6]  ali follow..  14  83........DEQEETQLTGAIAPVLIK------YGAEPPPWLAEYGPELTLLATVSIIGFGKYAMMQEIQKEEALKRAAIIQAAKAQGGAHAAATQ................................................................................................................................................................................................................................................................................................................................................................ 163
5 -4.390IDP00531 gene: ccmD; putative heme exporter protein D YPO2737 [Yersinia pestis CO92]  ali follow..  1...........................MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSM.............................................................................................................................................................................................................................................................................................................................................................. 70
6 -4.380IDP91946 integral membrane protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004617 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  2..........SISQRTTKLILATCLAYLLAYFLNLSSAVSAG------IIAL------LSLSDTRRSTLKLARNRLFSMLLAL--------AIGVLAFHLSGFHIWSLGLYLAFYVPLAYKMGWEIGITPSTVLVSHLLVQE----------TSPDLLVNEFLLFAIGTGFALLVNLYM............................................................................................................................................................................................................................................................................ 141
7 -4.150IDP02033 glycosyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1135 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  1......MNLKQISAIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTLNIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDDADEVLENECIKELKNLELQEDNIIALSDYVWRIFNKNFTRFNDNLVHESLVLISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCAL------------ITTYNQKERLKLVLDSVKNL------AFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAIKASKSEYIILIDGDMILEKDFVKNHLEFAKRKVIL................................................................................................. 369
8 -4.070IDP92689 hypothetical protein SAVC_09040 [Staphylococcus aureus subsp. aureus VC40] YP_005291395 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  11  301LQQQSNYFRFQYFN-------PLKSERYYRNLDEQVLALITGEIG--SMPDLKKPED-KPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQ................................................................................................................................................................................................................................................................................................................................ 417
9 -3.940IDP02326 gene: trxA2; thioredoxin [Francisella tularensis subsp. tularensis SCHU S4] FTT0976 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  3LSNVIKTDEANFDKLIDNTNKAVLVAPILDQLSKDYTKAVIVKVNVDENQNLAARFAIRSIPTLIVF-----NRKQLETLMGVHTASQLEQKLKA................................................................................................................................................................................................................................................................................................................................................................ 106
10 -3.820IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  14.....................................................................................IKNRKLYYPFALAVLLAVTITYLFYSLTFNPKIAEIRGGTTIQATLGFGMFVVTLASAIIVLYANSF-GIYGMLGLEKRHLISM-------TFKELVVFGILTV-GAGIGIGALFDKLIFAFLL----------------------KLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARMNALQLSREQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFGTYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTMSAA............................................................... 303

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.