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Query: gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207), from B.fragilis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIILKQDDSCQVAQTTCTTNSLEIRYKDYSVLKKTLDLNTKSINSNSCIELIIYGTHGNEKEICKLTKPDIKDLSYFFKGKVCRLVLDACHSACHIPHFKEMLTDDGIILCHVGICQVNSIETKTGKDTYERWINGNKEGLKVWSDGIVPAIYTRKNNTLTYYECSKFEVDINHPFTGTEFKTYCLNLKSKGIKMVIKNHSDFDKILast
1 -6.380IDP91376 hypothetical protein VV1_1694 [Vibrio vulnificus CMCP6] VV1_1694 [Vibrio vulnificus CMCP6]  ali follow..  18  32.................................................................................................................................................GEHSTLRIYIDHENGITVEDCAEVSLDVEDPISVA----YSLEVSSPGLDRPLFKPAHYEQ. 94
2 -6.180IDP04058 ABC transporter, solute-binding protein [Clostridium perfringens ATCC 13124] CPF_0556 [Clostridium perfringens ATCC 13124]  ali follow..  17  35.....NEKPSTEQAEGSGEKKVLEIAVFEGGFGKDYWDACIDAFEAEH-VEVKMEANPKIGDIIPKLSSENTPDFIYLSTNDQSGIA--------------NALIKDKALV-DLSDVFDREDPDNPGQKLKDKILPGFLDTTTPYGDGKVFLAPLYYNVTGMWYNKALFEKGWEVPKTWDEFFELGKKAKDEGIALYTYQGQA.... 222
3 -5.910IDP02321 gene: sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Francisella tularensis subsp. tularensis SCHU S4] FTT0077 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  364VVPVLRDTDTKSLAELEADVLDKAIKGRDGKLSLEDMQGGTFTITNGGTYGSMLSTPIINSPQSAILGMHNIVERPVVVKGEIKHRIIDGGTSVRFLKMIKELIEDPNRILLQV............................................................................................. 489
4 -5.770IDP06544 extracellular solute-binding protein, family 1 [Enterococcus faecium DO] EAN09718 [Enterococcus faecium DO]  ali follow..  12  10LLATGFLLTACGESQSSNESQQTTIQFMHSSVEQERLSVINELVAD-------------------EKENPDIKIKQVPVEESAFNTKIVTLARSGKLPEVMEVSQDFAKVMDKDELIDQTAVQNVIEEAGEDNYYDGAKNLVRSEDGKSYIAAPISGWVQGIWYDKEKLEAGFSEPENWDDILKIAQHFTDKE.............. 185
5 -5.560IDP04242 sugar ABC transporter, sugar-binding protein [Clostridium perfringens ATCC 13124] CPF_1113 [Clostridium perfringens ATCC 13124]  ali follow..  16  5ILSAILCMMIGATAMVGCGDKT---------------DSTQAKDGGKVKLRMTNWNNEDTMKDMLK-KLPNVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGY-------LENVNDLAKKYSDSGTNVYKY--DNNVYALPGISWFEGIYYNEKLFENNIQIPKTFDEYIEVCKKFQSLGIKPLAAGLKS.... 187
6 -4.970IDP01422 glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein VC1549 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  6LTGLLTATASGVFSASTLAATEITWWHAMGGQLGETVNQLATDFNADYKLTPVYKGSYTETAGIAAFRAGQAPNILQVFDAGAATIM----SSKGVAKPVQDLMIESGYPF------------------TAQDYIAGVRNFYADNTGKMVGMPFNSSTPVLYYNKDMLASVNAQAPQTYEQLEQVAAKLAEKG.............. 181
7 -4.900IDP95287 dihydrolipoamide acetyltransferase [Acinetobacter baumannii ATCC 17978] YP_001084730 [Acinetobacter baumannii ATCC 17978]  ali follow..  17  373ITPIVKAANQKSLAQISDDMRDLATRAKTGKLQPDEFQGGSFSISNLGMLGIKQFDAIINPPQGAIMALGASESRAVVENGNVVHRVIDGAVGAKFLASFKQFVENPALIL................................................................................................ 495
8 -4.890IDP95313 VgrG protein [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232524 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  23  879.....ATKEFNVVWQDIASRYPQEFREEQHQFIKRTYDIQIGHLRGK-----LLF--EHNRAAVHDL----IWSTSVQFGGRT-NLIFNALNGQ----NMESMTDKDIIILVQ----DYKLVNTERLFKSSPSW----------WSDLKKRAVSEKK--ALLELEIDGLEVDIK................................. 1017
9 -4.750IDP05708 hypothetical protein lmo2839 [Listeria monocytogenes EGD-e] lmo2839 [Listeria monocytogenes EGD-e]  ali follow..  10  12VLVLSAVLAACGGKESGSKEVTIEFMHERLDVINKLIAD--EKENPTIKIKQIPVEEDAFNTKVVTLKLPAVMEVS---------------------QDFAKVMDKDELI-------DQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKALDAGFEEPKNWADIEKVAKKFTNKA.............. 185
10 -4.660IDP02478 gene: pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [Bacillus anthracis str. `Ames Ancestor`] GBAA4182 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  294LVPVVKDTDRKSIFTISNEINDLAGKAREGRLAPAEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPVVKNGEIVHRLIDGATAQKALNQIKRLLNDPQLLVME.............................................................................................. 418

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.