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Query: gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415), from B.fragilis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAESKNNKKRCSFCGRSENEVGFLITGMNGYICDSCATQAYEITQEAMGAGKQSAGATRLNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDKAVEYKLGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLDYAKHQLEKANLARLQTALast
1 -104.000IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  51  2.....AKILYCSFCGKSQQEVKNIISGRDGNICNECVSKC-----AEKIRSTGSTSAEDISFEKLPKPVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITNLTKDDDTELKKSNVLLIGPTGSGKTLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNADFDVAKAQKGIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQVDTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDQQKNSLDSDKLMQKIESEDLTRFGLIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIAKKAITKKTGARGLRTILENVLLEVMFHIPSSDIEKVIINDKVILEQQEPILATKTQQQ 410
2 -98.200IDP01666 gene: clpX; ATP-dependent protease ATP-binding subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA4704 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  52  1MFKDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELC------TEIVQEELAKDEEVEFKDVPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIPEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERKTGARGLRSIIEGLMLEVMFELPSRDIEKCILTKETVADNAAPKLVLQDGTV 412
3 -95.100IDP06262 gene: clpX; ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] NP_346016 [Streptococcus pneumoniae TIGR4]  ali follow..  51  4.NRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELA------QEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAID-ENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQEVKLVRITKETVDGTDKPILETA.... 410
4 -94.800IDP02143 gene: clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 493] CBU_0739 [Coxiella burnetii RSA 493]  ali follow..  47  1MSSEKLQILYCSFCGKSQHQVRKLIAGPAVFVCNECVDLC------NDIIREEEIAQAGGAQKKLPTPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQVDTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFASKLIKQTEPGDLIKYGLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAIAKRAIQQKTGARGLRSIVEHTLLDLMYDLPGAGLRKVVIDSGVIDQASPPIFIYHHEKA 415
5 -94.800IDP00680 gene: clpX; ATP-dependent protease ATP-binding subunit SACOL1721 [Staphylococcus aureus subsp. aureus COL]  ali follow..  50  1MFKEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELC------SEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSN-EADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNNVTKVVITAQTINEETEPELYDAEGNL 412
6 -92.000IDP95071 ATP-dependent protease ATP-binding subunit ClpX [Peptoclostridium difficile 630] YP_001089820 [Peptoclostridium difficile 630]  ali follow..  49  1MSKEEKRQLKCSFCGKNQDQVRRLIAGPNVYICDECVELC------DEIIQEEIEDTIDEDTTSLPKPKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSKSSSKDIEIQKSNILLLGPTGSGKTLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAADFDIEKAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKIDTTNVLFILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKEDLGKLYEKVLPEDLLKYGIIPEFIGRIPVLATLELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFEEGALRAIAKKAIERNTGARGLRSIVESVMMETMFEVPSRNIKKVIVTEKSVNEDSVNPIIVLKDQE 413
7 -74.800IDP00672 gene: hslU; ATP-dependent protease ATP-binding subunit SACOL1271 [Staphylococcus aureus subsp. aureus COL]  ali follow..  29  3............................................................TAGIRLTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQ-EISPKNILMIGPTGVGKTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEATAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPDQESANQEALELAEQMGIIFIDEIDKVATNNHNSGQDVSRQTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQDNIGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSA 464
8 -72.700IDP01995 gene: hslU; heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii RSA 493] CBU_2012 [Coxiella burnetii RSA 493]  ali follow..  27  4..................................................................TPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRR-EIFPKNILMIGPTGVGKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAKMTREKAIRQVKSLAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQENIGARRLHTIMERLLEEVSFEATDKQGESITIDADYVNKQLKKLAEDEDLS. 443
9 -71.400IDP02473 gene: hslU; ATP-dependent protease ATP-binding subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA3967 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  23  6..................................................................TPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEN-LRDEIAPKNILMIGPTGVGKTEVARRMAKLVGAPFIKVEATKFTEDVEIEKKRQDVERKLAAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQM-GMNFQDALGSFMPKKTKKRKLSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQDNIGARRLHTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQ 460
10 -68.300IDP01620 gene: hslU; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0687c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  25  2..............................................................TQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQ-EVTPKNILMIGPTGVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLIQNGELDDKEIEIEVAVAPKTIGVMG-PPGMEDMTSQLQDLFSSLSTDKKKNKKMRIKDAIKLAQDEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILREPDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKENIGARRLHTVMERLLEKISFDAPELVEKNINITTDYVNEKLGNLVKNKDLS. 451
11 -40.500IDP00697 ATP-dependent Clp protease, putative SACOL2563 [Staphylococcus aureus subsp. aureus COL]  ali follow..  17  382......................................VATVHDISDTIQRLTGIPVSQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGFD------DGNRPIGSFLFVGPTGVGKTELAKQLAIDL-----FGNKDALIRLDMSEYSDTTAVSKM-----------------IGTTAGYVGYDDSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGNGNDA--------------------EEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIV----NLLLDDVQVTLDKKGITMDVSQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDLDHTDVKHVDIDVE................. 692
12 -40.300IDP01877 negative regulator of genetic competence ClpC/MecB [Bacillus anthracis str. `Ames Ancestor`] GBAA0080 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  470.....................................SEVTVEDIANVVSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLK------DPKRPIGSFIFLGPTGVGKTELARALAESM-----FGDEDAMIRIDMSEYMEKHSTSRL-----------------VGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSD----MKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHIQEIVTL----MVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSELKGAIEKGQKVIFDVEGESFVIHSAEKVK.. 811
13 -40.200IDP02389 gene: clpC; endopeptidase Clp ATP-binding chain C [Listeria monocytogenes EGD-e] lmo0232 [Listeria monocytogenes EGD-e]  ali follow..  16  469......................................EVTEDIVAEVVASWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLK------DPKRPIGSFIFLGPTGVGKTELARALAESM-----FGDEDSMIRIDMSEYMEKFSTARL-----------------VGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVTDPLKDHKA----MEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQIV----TLLTAQLTKRLAERDIHVKLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSELRGNIKVGDYVEIGVKDGKLEVRKKDAPKKK 811
14 -40.200IDP01335 gene: clpA; ATP-dependent Clp protease ATP-binding subunit VC1144 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  399..............DKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLG------AEHKPVGSFLFAGPTGVGKTEVTLQLSKLLG--------IELLRFDMSEYGERHSVSRL-----------------IGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAET------------VKKSIGLIQQDNSHDAMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVV----DKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANLFGSLVDGGTVKVTLSDDRLAFEYFGTREEV 754
15 -39.600IDP02671 gene: clpE; ATP-dependent protease [Listeria monocytogenes EGD-e] lmo0997 [Listeria monocytogenes EGD-e]  ali follow..  19  390......................................VIQASDIQAIIEEKTGIPVGRLQEDEQSKMKNLERNLTGKVIGQEDAVKKVAKAIRRSRVGLK------SKNRPIGSFLFVGPTGVGKTELGRTLAREL-----FGTSEAMIRLDMSEFMEKHSISKL-----------------IGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVSFKDTVIIMTSNAGATDTEASVGFNTTTETKLEKGS--------DILAKLGAYFKPEFLNRLDSVIEFKSLEKDDLVQIIDL----MLVDLNEMLAQEGVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDTIADIDQPEAKNLVATLNDNKEIT........... 717
16 -38.800IDP91438 ClpB protein [Vibrio vulnificus CMCP6] VV1_0482 [Vibrio vulnificus CMCP6]  ali follow..  14  529.....................................NKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGL------SDPNKPIGSFLFLGPTGVGKTELCKTLANFM-----FDSEDAMVRIDMSEFMEKHSVARL-----------------VGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFAMLDYQGIKE------------QVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQ----LNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKLAGSVLPDKKIQLIVNNDQI........... 853
17 -38.100IDP02116 gene: clpB; clpB protein [Coxiella burnetii RSA 493] CBU_0094 [Coxiella burnetii RSA 493]  ali follow..  16  531.....................................SRVTEEEVAEVVSKWTHIPVSKMLEGEREKLLHMETELHKRVIGQDEAVNAVANAIRRSRAGL------SDPNRPVGSFLFLGPTGVGKTELCKALAVFL-----FDTEDAMVRIDMSEFMEKHSVARL-----------------IGAPPGYVGYEEGGYLTEAIRRRPYSVILLDEIEKAHNDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSN-------------LGSDLIREFSGENYDKMKDAVMEVVAQHFRPEFINRIDEAVVFHSLKKEQIRNIAIIQ----IDRIKKRLKEKDYQLTISDDALDYLSELGYDPVYGARPLKRVLQQQLENPLSQLEGKFVPGSLINIEKKGEQL........... 854
18 -37.700IDP04143 gene: clpB; Clp ATPase [Yersinia pestis CO92] YPO3275 [Yersinia pestis CO92]  ali follow..  18  529.....................................NRVTEIEVAEVLARWTGIPVSRMLKSERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGL------SDPNRPIGSFLFLGPTGVGKTELCKALATFL-----FDSDDAMVRIDMSEFMEKHSVSRL-----------------VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE------------HFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQ----LERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQLSGKLIPGIPVTLDVENGHI........... 853
19 -37.300IDP02556 gene: clpB; ClpB protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1769c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  531.....................................TSVTENEIADVVSKATGIPVSKMMEGEKDKLLNMESFLHKRVIGQDQAIKAVSNAVRRSRSGL------SDPNRPIGSFMFLGPTGVGKTELTKALAEFL-----FDDEDAMLRVDMSEFMEKHSVARL-----------------IGAPPGYVGYEQGGYLTEHVRRKPYSVILLDEVEKAHADIFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSN-------------LGSHRIQEMQGQDYETVKSAVMEMVLSHFRPEFVNRVDDAIVFEPLNKEMITEIAKIQ----IKRLEKRLADLSIGLEVTTGAMDKLADAGFDPVFGARPLKRAIQNNLENPLALLDGEFKAEDKIVVDIDANN............ 853
20 -35.000IDP01651 gene: clpB5; Clp ATPase [Yersinia pestis CO92] YPO2946 [Yersinia pestis CO92]  ali follow..  16  551.....................................TEVNAEVIASIVADWTGIPVGQMLKDDIRAVMELPQRLEARVIGQPHALMQLGENIMTARAGL------SDPRKPLGVFMLVGPSGVGKTETALAIAESM-----YGGEQNMITINMSEYQESHTVSSL-----------------KGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNLLADPDTAPDQDGILS--------ALQPELLKVFPAAFLGRVT-VIPYLPLQQDALQHIVRLHLDRIGARLY---SQHQLTLKYSDEVVEDVVSRCAVSETGARMLIRYIEQNITPKIGKLGDSDVKPEQIIFVHKNENGFVIALQCKDDE 890
21 -34.800IDP00663 gene: clpB; ATP-dependent Clp protease, ATP-binding subunit ClpB SACOL0979 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  533.....................................EVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGI------KDPNRPIGSFLFLGPTGVGKTELAKSLAASL-----FDSEKHMIRIDMSEYMEKHAVSRL-----------------IGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLEN----------VKETGEITESTEKAVMTSLNAYFKPEILNRMDDIVLFKPLSIDDMSMIVDKI----LTQLNIRLLEQRISIEVSDDAKAWLGQEAYEPQYGARPLKRFVQRQIETPLARIKEGFPEGTTIKVNLNSDNNLTFNVEKIHE. 869
22 -34.800IDP01772 gene: clpB2; Clp ATPase [Yersinia pestis CO92] YPO3599 [Yersinia pestis CO92]  ali follow..  18  537.......................................VDKSQIAAVIAEWTGVPLNRLSQSELAVVTELPSYLGQQIKGQETAIHCLHQHLLTARADLR------RPGRPMGAFLLVGPSGVGKTETVLQIADLL-----YGGRQYLTTINMSEFQEKHTVSRL-----------------IGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNIVFFLTSNLGYQTIVDHA--------------DEPALLNERLYPELSAFFKPALLARME-VVPYLPLGMETLQIIIHGKLNRLDTLLRQ---RFSADVVIEPEVIDEILLRATRAENGARMLESIIDGALLPPVSL............................... 835
23 -34.800IDP04443 gene: clpB; putative Clp ATPase [Yersinia pestis CO92] YPO0506 [Yersinia pestis CO92]  ali follow..  13  535.......................................VDEQSIAAVLSDWTGIPSGKMLQDDIECVLNLEQRLGDHIFGQRNAIKEISQAIRIARAGIQ------SQERPLGIFLLAGSTGTGKTETANVLVETL-----YGGAHNLITFNMSEFQEAHTLSTL-----------------KGAPPGYVGYGKGGKLTEAVRRKPYSVILLDEFDKAHADIQDAFYQVFDKGWMEDAEGRRVSFRQCFILLTCNQGAEEIEQAYLTANDIKPGALKP---------LVYDALLRRFAPALLARVN-IIPYIPLDQDALAQIASHHLARLQTRLWD---EIGATLVTEGDIPGWIASRVCSHPNHGRAVEELLRQTLLPAVGN............................... 838
24 -34.700IDP00175 putative ATPase subunit of ATP-dependent protease YPO1471 [Yersinia pestis CO92]  ali follow..  18  545.......................................VDVRTVAAVIADWTGVPLGSLLKDEQTNLLSLENRLGERVIGQDAALGALAQRLRAAKTGLT------SENGPLGVFLLVGPSGIGKTETALALADSL-----FGGEKSLITINLSEYQEAHTVSQL-----------------KGSPPGYVGYGQGGVLTEAVRKRPYSVVLLDEVEKAHRDVLNLFYQVFDRGFMRDGEGREIDFRNTVIVMTANLGSDHLMQLLDEQPDAPDSTLHE---------LLRPILRDHFQPALLARFQTLI-YRPLQVDALKRIVAIKLNQVAQRLH---CHYGLSCQIEDSLTDTLVAACLLPDTGARNIDSLLNQQILPVLSQ............................... 848
25 -34.600IDP92126 clp ATP-binding chain B1, putative [Toxoplasma gondii ME49] TGME49_068650 [Toxoplasma gondii ME49]  ali follow..  17  555.....................................DTVTAEDIAQVVGSWTGIPVSRLVEGEREKLLGLEKALNDRVIGQEEGVRSVAEAIQRSRAGL------CDPNRPIASLVFLGPTGVGKTELCKALARQL-----FDTEEALLRFDMSEYMEKHSTARL-----------------IGAPPGYIGFDKGGQLTEAVRRRPYSVLLFDEMEKAHPEVFNIFLQILEDGILTDSHGHTVSFKNCIIIFTSNMGSDLLLQ------------ASGTKDREEVTQALMEIVRRHLRPELVNRMDEFVVFNPLSEANLFGIFDLE----VAKLQARLTDRRLTLSVTHRAKADIVQAAYDPNFGARPLRRAVQHTLETPLSRLSGSISNGRRVGVASKQEELPVSSEKIEDSK 890
26 -34.500IDP92125 heat shock protein, putative [Toxoplasma gondii ME49] TGME49_057990 [Toxoplasma gondii ME49]  ali follow..  14  531.....................................EVVGPEQIADVVHRWTNIPVQKLTQTETERFLTLGKSLAEQVIGQPQAVEAVTQAILRSAAGL------SRRNRPIGSFLFLGPTGVGKTELCKRVAESL-----FDSKERLVRFDMSEYMEQHSVSRL-----------------IGAPPGYVGHDEGGQLTEEIRRNPYSVVLFDEVEKAHSQVWNVLLQVLDDGRLTDSQGRTVDFSNTIIILTSN-----------LGAGFLIEAAQRVDPVAAATEMVMMEVRKFFRPELLNRLDDIVIFKALTDVNLRQVMKLQ----MQEVRERLAEKRIELTMTNRAADHIVKEAFDPAYGARPLKRFIERHVVSDLSLLKGEIFADSHVVCDWDEKRRGWVWTTSALEV 867
27 -34.400IDP90100 ZZZ_0016 [Escherichia coli 042]  ali follow..  18  511.......................................VDKNCVADVVSGWTGVPLGVCLDGEQQKASGLLRCLEQRVLGQRYAMSAIASQVLICRADLK------DPVKPDGVFLLAGPSGTGKTETARALAEFV-----YGDENKLITINMTEFQEAHTVSTL-----------------KGAPPGYVGFGQGGTLTERVSHNPYSVILLDEIEKAHPDVLEFFFQIFDSGIIEDAEGKMVSFRDCLIIMTSNFASENITNIWNDGETNRDRIKE----------MLLPLFNEHFGAAFMGRTN-LIPFTPLHSKTLRDIVLIKIDKICQRFEQA-SGQMYKIEYNDSLIDWITHHCQCDKSGARDIDSVLNSTVLPVLAR............................... 815
28 -33.400IDP01480 clpB protein VCA0116 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  542.......................................VDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARADL------RRPGRPKGAFLLVGPSGVGKTETVVQLAEQL-----YGGKQFLTTINMSEYQEKHTVSRL-----------------IGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYA--------------DEPAKLDEALYPELAAFFKPALLARME-VIPYLPLGKEVLAQIVRGKLARLEKLFKT---RYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLLPPVSL............................... 840
29 -29.900IDP92128 clpB protein, putative [Toxoplasma gondii ME49] TGME49_082200 [Toxoplasma gondii ME49]  ali follow..  15  548.......................................LTADDVAQVISLWTGIPLAKLTDDEKSKILRLSDLLHSRVIGQDDAVKAVADAMVRARAGL------SREGMPVGSFLFLGPTGVGKTELAKALAMEM-----FHSEKNLIRIDMSEFSEAHSVSRL-----------------IGSPPGYVGHDAGGQLTEAVRRRPHSVVLFDEIEKGHQQILNIMLQMLDEGRLTDGKGLLVDFTNCVIILTSNVGAQYIISAYEQAEKESKTASGNWKKEARRKILSEIAGSGLLKPEVVNRFSGVIIFEPMNPADVRKIL----AIQSKDLKNALQRKGIELVIDASAEEFIVQRSYTHKFGARPLKRFVDNHIGAKMAPLSGYLQPGMRVTVVASKRNKNTLEAHVCKVV 940
30 -23.100IDP05235 gene: ruvB; Holliday junction DNA helicase B [Listeria monocytogenes EGD-e] lmo1532 [Listeria monocytogenes EGD-e]  ali follow..  17  1............................................MDERIISSETVDAEEVSFETSLRPQNLSQ-----YIGQDKVKNNLTVFIEAATLR----------NEALDHVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSL--------------EPGDVLFIDEIHRL--------------SRAIEEILYPAMEDYCLDI----IGTGPTARSVRLDLPPFTLIGATTRAGL------------------------------------------LSAPLRDRFGVIDHLEFYTEEQLTEIVLRTSNIL-------------DTKIDDLGAREIARRS---RGTPRIANRLLKRVRD.................................... 231
31 -23.100IDP04216 gene: ruvB; Holliday junction DNA helicase B [Salmonella typhimurium LT2] STM1894_1_336 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  10....................................................AGATIAEDVADRAIRPKLLAE-----YVGQPQVRSQMEIFIQAAKRR----------GDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGP--------------VLEKAGDLAAMLTNLEPHDVLFIDEIHRL--------------SPVVEEVLYPAMEDYQLDI---MIGEGPAARSIKIDLPPFTLIGATT-------------------------------------------AGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHM-------------GLEMSDDGALEVARRA---RGTPRIANRLLRRVRD.................................... 232
32 -22.800IDP00067 gene: ruvB; holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] NT01CJ1369 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  20  21..................................................................RPSNFDG-----YIGQESIKKNLNVFIAAAKKR----------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSG--------------DLAAILTNLSEGDILFIDEIHRL--------------SPAIEEVLYPAMEDYRLDI---IIGSGPAAQTIKIDLPKFTLIGATTRAGM------------------------------------------LSNPLRDRFGMQFRLEFYKDSELALILQKAALKL-------------NKTCEEKAALEIAKRS---RSTPRIALRLLKRVRD.................................... 229
33 -22.600IDP06190 gene: ruvB; Holliday junction DNA helicase RuvB [Helicobacter pylori J99] NP_223085 [Helicobacter pylori J99]  ali follow..  18  22..................................................................RPNLWED-----FIGQEKIKSNLQISICAAKKR----------QESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNL--------------QAKDILFIDEIHRL--------------SPAIEEVLYPAMEDFRLDI---IIGSGPAAQTIKIDLPPFTLIGATTRAGM------------------------------------------LSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKL-------------NQDIKEESADEIAKRS---RGTPRIALRLLKRVRD.................................... 230
34 -14.100IDP95260 DNA-binding ATP-dependent protease La [Acinetobacter baumannii ATCC 17978] YP_001084064 [Acinetobacter baumannii ATCC 17978]  ali follow..  22  24..........................................................NKASKVSINLNKAQEILDADHYGLDDVKDRI----------VEYLAVQSRVKKLKGPILLVGPPGVGKTSLGESVAKATGREFVVRDEAEI-RRTYIGAMPGKIVQSLTKVGVKN-------LFLLDEIDKMAQDYRGD-----------ASALLEVLD------PSQNSKFNDHYLDLDLDLSEVMFICTA--------------------------------------------SMNIPEALLDRME-VIRLPGYTEDEKVNI---AERYLVPKAIKNNGLRPKELTIHEEAIRDIVQR-YTREAGVRNLEREVSKIARKVVKEAVSKKSKNLQLDVT................. 292
35 -12.200IDP02793 gene: loN; ATP-dependent protease La 1 [Bacillus anthracis str. `Ames Ancestor`] GBAA4702 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  301..........................................................TDATEDMIDLAHSEEILNKDHYGLEKVKERV-LAVQKLTNSLKGP------------LCLVGPPGVGKTSLARSIATSLNRNFVVRDESEI-RRTYVGAMPGRIIQGMKKAKSVN-------VFLLDEIDKMSNDFRGD-----------SAALLEVLD------PEQNHNFSDHYIEEPYDLSKVMFVATANTLSS------------------------------------------IPGPLLDRME-IISIAGYTELEKVHIA---REHLLPKQLQEHGLRKGNLQVRDEALLEIIRY-YTREAGVRTLERQIAKVCRKVAKIIVTAERKRIVVTEKNVVD............. 574
36 -12.200IDP02742 hypothetical protein GBAA2122 [Bacillus anthracis str. `Ames Ancestor`] GBAA2122 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  12....................................................................EKIINNIEKLMVGKRKETILALTAL-----------------LAEGHVLLEDVPGVGKTMLVRALSKSIDADYKRIQFTPLLPSDVTGVSIYNPKELQFEFKPGPI----GNFILADEINRTSPK--------------TQSALLESMEEGNITIDGMTRPL--PKPFFVMATQN--VEYEGTYPLPEAQLDRFLLKLKMGYPTPEEELLYLQQSVREVSMDKGIKHYIVKLVSQTRSYSSIQL-GASPRGSIALMKASQAYAFIHGRNYVIPDDVKFLAPYVLAHRLILKMEAKFEGITG-EQVISKIVART.................................. 286
37 -11.800IDP92077 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_097370 [Toxoplasma gondii ME49]  ali follow..  12  39..............................................................................MVGQEKAREAAGYVV----------ELIRCKRMAGKALLLAGPPGTGKTAIAMAIAQELGVPFCPMVASEVYSTEVKKTEIEGQVMEMIDEPSES-RVTSPIKITLKTQKGSKTLRLAPQINEGLKRQQIRVGDVIYIEASTGNVKRVGRSDDFAMELGQLAKPRKTEITEKLRMEINKVVNRYIDQGIACFTYLNRALESSLTPIVVFATNRGICTHGIPVDLLDRM-LIARTLPYNLEEIKHVIR-------------IRAKIENLDMEEEAITLLGEIGER------SLRYAVHLLTPASILAETEADEEAPAITRDHILR............. 439
38 -11.700IDP01644 gene: lon; DNA-binding, ATP-dependent protease La [Francisella tularensis subsp. tularensis SCHU S4] FTT0626 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  306..........................................................GKRAKVKRDINLAEKVLEKDHYGIKKVKERILEHL--------AVQIKRDSNTKAPILCLVGPPGVGKTSIGQSIARATGREYVVRDESEI-RRTYIGSMPGQIIQKIIKSKTEN-------LFLLDEIDKISSDFRGD-----------SAALLEVLD------PEQNSTFNDHYLEIDYDLSKVMFVATA--------------------------------------------SLDIDPALRDRLE-IINLSGYTEIEKQAI---AKQYLIPKALENNGLTKDEINFTPKAILDIIRY-YTREAGVRNLQQKIDGVCRKAVKNLKDSNTGKISITQKNLED............. 580
39 -11.400IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]  ali follow..  18  11..................................................................RPQTFAD-----VVGQEHVLTALANGLSLG--RIHHA------------YLFSGTRGVGKTSIARLLAKGLNQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHS---------------NALLKTLEEP----------------------AHVKFLLATT------------------------------------------------PQ---KLPVTI-LSRCLQFHLKAL---DVEQIRAQLEKVLLAEQIT--SDARALQLLARAA-----GSRDALSLTDQAVSMGQGQVTTVTVSQMLLDDEQPLAIIEALVSADGARV 264
40 -11.200IDP90346 gene: lon; ATP-dependent protease La [Chlamydia trachomatis D/UW-3/CX] CT344 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  21  343.............................................................TKEYHDLKKAESILNKDHYGLEDIKQRILISVGKLANGMKGS------------ICLVGPPGVGKTSIGRSIAKVLHRKFFMRDEAEI-RRTYIGAMPGKLVQALKQSQIMN-------VIMIDEVDKIGSSYHGD-----------ASALLEVLD------PEQNKDFLDHYLDVRVDLSNVLFILTANVLDS------------------------------------------IPDPLLDRME-VLRLSGYILEEKLQI---ATKYLVPRARKEMGLSAQNVTFQPEALKHMINN-YAREAGVRTLNENIKKVLRKVALKIVQNQEKNLSKKSRFT............... 611
41 -11.100IDP90616 DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar eltor str. N16961] VC1054 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  11..................................................................RPTRFSE-----VVGQSHVLTALENALAQN--RLHHA------------YLFSGTRGVGKTTIGRLFAKGLNQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHS---------------NALLKTLEEP----------------------EYVKFLLATT------------------------------------------------PQ---KLPVTI-LSRCLQFHLKPI---SVENIQQQLDKVLHAEQIS--SDSKALNLLAHAA-----GSRDALSLTDQAIALGNGVVKSDIVAHML..................... 241
42 -11.000IDP02184 gene: ftsH; ATP-dependent metalloprotease FtsH [Coxiella burnetii RSA 493] CBU_1352 [Coxiella burnetii RSA 493]  ali follow..  14  158..............................................................................VAGVDEAKEEVKELV--EFLRDPGKFQRLGGKMPCG-VLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA----KKQAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGKEGIIVMAATNRPDVLD-GREYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALFAARENKKDVSMSEFERAKDKI--------MGAERRSMVMSDDEKKLTAYHEAGHAIVGLHMLEHDP----VYKVTIIPRGRALGVTMFLRRLECQLAGLFGGRIAEEIIFGPDLVTTGASNDIEKATEIA 504
43 -10.900IDP04393 gene: lonB; ATP-dependent protease LonB [Clostridium perfringens ATCC 13124] CPF_1645 [Clostridium perfringens ATCC 13124]  ali follow..  15  69............................................................................EEIIGQEKGIKALKAALCGPNPQH---------------VIIYGPPGVGKTAAARIILEEAKKMAASPFNKDSKFVEIDATTLRFDERPIYQGAGGAVTKAHGGILFIDEIGEL--------------HPIELNKLLKVLEDRKVFLDSAYYSSEDPNTDNGLPADFRLIGATTRSPE------------------------------------------EIVPAIRSRC-VEIFFRGLTVEEIRKIALN-------------ATNKVGYRISDEGLDIVSRY-CTNGREVINLVQLCSGLAINENRDYIKESDIYWVIE................... 334
44 -10.900IDP92073 ruvB-like 2 protein, putative [Toxoplasma gondii ME49] TGME49_088860 [Toxoplasma gondii ME49]  ali follow..  14  50..............................................................................MVGQPDARKAAGLVC----------KLVKAGRIAGRAVLLAGQPGSGKTAIAMAVAKELSTPFTHISGSEIFSLEM---SKTEALTQAFRRS--NVLIKQEAEIIEGEVVEIEINRQTSKTTEMETLYDLGAKMIDALTKEGVTAGDVITIDKSTGKVTRVRAQGFLALFAGDTGEIKSEVREQIDQKVADWRAEGKAEVVPGVLFIDEVHMLDIECFSFLNRALEHETSPIVIDLLDRSLIIPTQPYEEKDMLKIIELRAEEEDVEL--EESARLLLCKIAAE--CSLRYALHLITVAN------LVCRKRRGSVVTVQDIRR............. 436
45 -10.800IDP02605 gene: hflB; ATP-dependent metalloprotease [Yersinia pestis CO92] YPO3502 [Yersinia pestis CO92]  ali follow..  16  154..............................................................................VAGCDEAKEEVSELV--DYLREPSRFQKLGGKIPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD-GREQILKVHMRRVPLDTDIDASVIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI--------MGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDP----VHKVTIIPRGRALGVTFFLQKLESQISTLYGGRLAEEIIYGPEKVSTGASNDIKVATSIA 500
46 -10.800IDP02738 gene: hflB; ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis SCHU S4] FTT1310c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  154..............................................................................VAGVDEAKEEVAEIV--DFLREPKKYEKIGGKIPKG-VLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA----KKKAPCLVFIDEIDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRPDVLD-GREAILKVHMKKVALGEDVRADWIARGTPGFSGAELANLVNEAALFAARESKDKVSMADFEKAKDKI--------MGSERRSMAMTEKEKRLTAYHEAGHAIIGRLMPEHDP----VYKVSIIPRGRALGVTMYMLVLRGRLCSILGGRIAEELIFGYDHVTTGASNDIQVATDIA 500
47 -10.600IDP91185 AAC46367 [Vibrio cholerae]  ali follow..  16  127...........................................................................GDAVVADTKSLKLLALA--------------DKVAKTDANVMILGPSGSGKEVMSRYISPRKEGPFIAINCAAMLEATLFGYE-KGAFTGAVQACPGKFEQAQGGTILLDEISEMD---------------NLQAKLLRVLQ---------------EREVKRLGSRKSIKLDVRVLATSNRDLKQYVQAGH------------------------------FREDLYYRLNVFLTWPALCEDNIEPLANHLIERHCKKLGLPVP------SIAPNAITKLLNYPWPGNV--RELDNVVQRAL..................................... 357
48 -10.500IDP92574 cell division cycle 48 protein [Toxoplasma gondii] ACU32853 [Toxoplasma gondii]  ali follow..  19  198.....................................................................RLDEVGYDDIGGCRKQMAQIREMIELPLRHPTLFKTLG---KPPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSK-MAGEA-ESNLRRAFEEA----EKNAPAIIFIDEIDSIAPKREKTNGEVERR---VVSQLLTLMDGLK-------------------GRGQVVVIGA--------------------------------------TNRQNSIDPALRRF--GRFDREIDIGVPDDNGRLEILRIHTRNMLAANTHGFVGADLAQLCTEAALSCIREK........................................................ 427
49 -10.400IDP02403 sigma-54 dependent DNA-binding response regulator [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1024c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  101...........................................DVDTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLS-------------QKAAKTDASVMFFGESGVGKEVFSRYISKRSNKPFIAINMAALIESELFGFE-KGAFTDANATKIGLFEMANEGTLFLDEIGEMP---------------EIQAKLLRALQ---------------EKEITRLGSTKSIKIDVRIISATNANLDEKIKNGE------------------------------FRSDLYYRLNTVINIPPLREEEILGIAQKVLEDTCKEYDFKEK------QLSQEAKNALLEYDFPGNI--RELISVVQRACEDLFLEARSIKKDVKNLEKELICEVLLSVDYDKDQAS 411
50 -10.300IDP02494 hypothetical protein GBAA0550 [Bacillus anthracis str. `Ames Ancestor`] GBAA0550 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  60.....................................................................RKYNFFSNQLFGLEDALERLVEEYFH--------PSAKRLDVRKRILLLMGPVSGGKSTLVTMLKRGLE-PLHLIPHHLRDDF--PSDPKSQDIADLTGSLDGELNKANRGMMEFQEMLK--------------CDEKFLWHLLSLTQEGNFKAGRFALISADELIVAHTNETEYRSFIAN---KKNEALHSRIIVMPVPYNLRVSEEEHIYEKMIRESDVSDV----IAPHTLRVAAMFTILTRLKDPKRPDIYNAIDVEELQREYQDEGMKGIDPRYVINRISSTIIRKEVPSINALDVLRSLKDGLDQHPSISNEDRERYMNF-ISLARKEYDEIAKKEVQKA 479
51 -10.200IDP91903 hypothetical protein SpneCM_05798 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005798 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  15  189..............................................................................VAGAEEEKQELVEVV--EFLKDPKRFTKLGARIPAG-VLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRSLFEDA----KKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLD-GREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRV--------AGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARV----VHKVTIVPRGRAGGYMIALKEDMKEQLAGLMGGRVAEEIIFNVQTTGASN.......... 524
52 -10.000IDP90644 gene: holB; DNA polymerase III subunit delta` [Salmonella typhimurium LT2] STM1201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  2............................................................................KWYPWLRPAYEKLVESYQAGRGH--------------HALLIQALPGMGDEALCYALSRYLLCQ-THPDYYTLTPDKGKSSLGVDAVREVSEKLYEHSRLGGAKVVWIADAALLTDAAAN--------------ALLKTLEEPPEQTWFFLASPEPARLLATLRSRCRLHHLA---PSESYAMSWLSREVTASQEALLTALRLNAGSPGAALALLQSERWAQREALCQALDWYAVLTALNHEQAPARLHWLATLLVDALKRQHGASYLTNVDADAVVAALAG-----PLSPARIQAILNDVCH.................................... 295
53 -9.730IDP92030 ruvB-like 1, putative [Toxoplasma gondii ME49] TGME49_019590 [Toxoplasma gondii ME49]  ali follow..  12  76..............................................................................MVGQEKAREAAGLVV----------DLIKAKKLAGQALLFAGPVGSGKTALAMAIAASLEVPFVPLSSSSVYSSEVKKTEVLEACRKAIALRIREVKEVYEGEVVLHDLDVANAKPQGGTDIISVMGQFLKPRKTEITEKLRSEINKTVNKYIDQGIAELLPGDEVHMLDIECFTFLNRILESPLSPIIIFATNRGVCTVRGTDSIE---------PHGMPVDLLDRL-LIVKTAPYTISEVVQVLK-------------IRSQAENVRLSTEALELLGEVGSH--TSLRYALQLLEPAR------ILAEVEGHEIVERKHIED............. 468
54 -9.540IDP90924 gene: holB; DNA polymerase III subunit delta` [Yersinia pestis CO92] YPO1606 [Yersinia pestis CO92]  ali follow..  10  7.................................................................................LNAPYRQLVGQHSTGRGH--------------HALLLHSLPGNGEDALIYALSRWLMCQ-NHPDWYVLTPEKGKSSIGVELVRQLIDKLYSHAQQGGAKVVWLPHAEVLTDAAAN--------------ALLKTLEEPPEKTYFLLDCHQPASLLATLRSR-LNLQWRKRQIPVEPVAMLAALKLSEGAPLAAERLLQPERWSIRSALCSGLR------EALNRSDLLSLLPQLNHDDAAERLQWLSSLLLDALK--WQQGAGEFAVNQDQLPLVQQLA--HIAATPVLLQLAKQLAH.................................... 301
55 -9.500IDP91261 DNA polymerase III, delta prime subunit [Bacillus anthracis str. Sterne] NT05BA0041 [Bacillus anthracis str. Sterne]  ali follow..  12  1......................................................................MTKTWEQLSAIQPIGVKMLMNSIAKERIS--------------HAYLLEGEKGTGKFATAIQMAKSFLCSIDSGNHPNLHIVKPDGLSIKQQIHDLQEEFSKTGLEANKKVYIIEHADRMTANAAN--------------ALLKFLEEPSSDTTAILLTEQSHQILNTILSRVVTFRPLPTESLIRRLQDEGITVSLSTLAAQLTNSFDEALTLCNDEWFAQFVQEKWGKHFGEKEQLQQGLDML-KDLLYVQLGEEDRLVFREQKEMFESFSYAQKRIVSALFNILEAKNRINANVNA-QLVFEQLVLRL.................................. 324
56 -9.480IDP01132 gene: loN2; ATP-dependent protease LA BA_4703 [Bacillus anthracis str. Ames]  ali follow..  16  32...................................................TQKVSIDRESKKELEQLRKMREISLTEPLAEKVRPTSFLVGQEDGIKSLKAALCGPNPQH----VIIYGPPGVGKTAAARLVLEEAKRNPKFRTNATFIELDLIGSVHDPIYQGA-QPKKGAVTDAHGGILFIDEIGEL--------------HPIQMNKMLKVLEDRKVFLESAYYSEENT---KGLPADFRLVGATTRSPE------------------------------------------EIPPAIRSRC-LEVFFRELDTEEIQKVAKN-------------AADKVEMQIGENGIEMIGM--YARNGREAINLVQISAGMA.................................... 317
57 -9.240IDP04353 gene: YPCD1.96c; putative transposase [Yersinia pestis CO92] YPCD1.96c [Yersinia pestis CO92]  ali follow..  26  24........................................................LEQAAKKELNYREFLCMALQQEWNGRHQRGSRLKQARLPWVKTLEQFDFTFQPGIDRKNVILLGPPGVGKTHLAVALG......................................................................................................................................................................................................................................................................................... 118
58 -9.150IDP04090 gene: aroK; shikimate kinase [Clostridium perfringens ATCC 13124] CPF_0694 [Clostridium perfringens ATCC 13124]  ali follow..  13  1..............................................................................................................MKKRGVLLIGMPGAGKTTIGRDLSTVLKMNFLDMDE-------FIERSTGKEIKELFAQGEEVFRDLESKSC-LSTLKNVVISSGGGIVTREENMGNFKEFITVFINRPLDLI................................................................................................................................................................................................ 107
59 -9.020IDP06104 hypothetical protein jhp0654 [Helicobacter pylori J99] NP_223372 [Helicobacter pylori J99]  ali follow..  17  1............................................................................................MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVFHYDFYMRDLETCLELGMLEKGIHFVEWGDEKLE............................................................................................................................................................................................................................... 104

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.