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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -7.880sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1 (Range: 301-600)  ali follow..  17  181........................................................................................................PNKNVYQILFPDGT-------GQIHYP------------SGNLAMLILYAKMKKFIILEDSLEGRIRAL-INNSGNA----------NSDIWLNLS-----------------SNLGYYFPKDKRQKAWNWWNLNIHVHAPPVQPISLKINEYIQVQIR................................................ 299
2 -7.720sp|P01031|CO5_HUMAN(removed signalp:1-18) Complement C5 OS=Homo sapiens GN=C5 PE=1 SV=4 (Range: 601-900)  ali follow..  13  157..................................................................................................WEVHLVPRRKQLQFALPDSLTTWEIQGVGISNTGICVADTVKAKVFKDVFLEM----NIPYSV-VRGEQIQLKGTVYN---YRTSGMQFCVKMSAVEGIGTKSSKCVRQKVEGSSSHLVT............................................................................................. 279
3 -7.410sp|Q9Y6R7|FCGBP_HUMAN(removed signalp:1-23) IgGFc-binding protein OS=Homo sapiens GN=FCGBP PE=1 SV=3 (Range: 151-450)  ali follow..  11  2.............................................................................................KGSVTFNGKFYPAGDVLRVTLQPYNVAQLQSSVDLS--SKVTASSPVAVLSGHSCAQKHTTCNH---VVEQLLPTSAWGTHYVVPTLASQSRYDLAFVQATKLTYNHGGITGSRGLQAGDVVEFEVRPSWPLYLSANVGIQ----VLLFGTDPYLVLIPDVAAYCPALVVAQTKAISGLTIDGH.................................. 202
4 -7.390sp|P0C0L5|CO4B_HUMAN(removed signalp:1-19) Complement C4-B OS=Homo sapiens GN=C4B PE=1 SV=1 (Range: 601-900)  ali follow..  12  165..................................................................................................WRVETVDRFQILTLWLPDSLTTWEIHGLSLSKTKGLCATPVQLRVFREFHLHL----RLPMSV-RRFEQLELRPVLYN---YLDKNTVSVHVSPVELCLAGGGGLAQQVLVPAGSARPVA............................................................................................. 279
5 -7.390sp|P0C0L4|CO4A_HUMAN(removed signalp:1-19) Complement C4-A OS=Homo sapiens GN=C4A PE=1 SV=1 (Range: 601-900)  ali follow..  12  165..................................................................................................WRVETVDRFQILTLWLPDSLTTWEIHGLSLSKTKGLCATPVQLRVFREFHLHL----RLPMSV-RRFEQLELRPVLYN---YLDKNTVSVHVSPVELCLAGGGGLAQQVLVPAGSARPVA............................................................................................. 279
6 -7.310sp|Q9H106|SIRPD_HUMAN(removed signalp:1-29) Signal-regulatory protein delta OS=Homo sapiens GN=SIRPD PE=2 SV=2  ali follow..  14  8...................................................................................................MSQTVSTGESIILSLPNGPVLWFKGTGPNRKLIYNFKQGNFPRV--KEIGDTTKPGNTDFSTRIREISLADAGTYYCVKFIKGRAIKEYQSGRG-TQVFVTEQNPRPPKNRPAGRAGSRAHHDAHTALPERNSTNY............................................................................ 149
7 -6.670sp|Q9UHN6|TMEM2_HUMAN Transmembrane protein 2 OS=Homo sapiens GN=TMEM2 PE=1 SV=1 (Range: 1-300)  ali follow..  13  132..............................................................................................................QVVIKEGDMLRLTSDATVH--------SIVIQDGGLLVFGDNKDGSRNITLRTHYILIQDGGA-LHIGAEKCRYKSKATITGGTLELHGARKASWTLL-----ARTLNSSGLPFGSYT--FEKDFSRG----------------------NVRVIDQDTAKILESERFDTHEYRNESRRLQEF.................. 300
8 -6.620sp|Q6IMN6|CAPR2_HUMAN Caprin-2 OS=Homo sapiens GN=CAPRIN2 PE=1 SV=1 (Range: 901-1127)  ali follow..  14  93..........................................................................................................................PQQMRVAFSAARTSNLAPGTLDQPIVFDLLNNLGETFDLQLGRFNCPVNGTYFHMLKLAVNVPLYVNLMKNEEVLVSTASNHAILQLFQGDQIWLRLHRGAIYGSSWKYST---SGYLLYQD................................................................... 227
9 -6.580sp|Q9HC77|CENPJ_HUMAN Centromere protein J OS=Homo sapiens GN=CENPJ PE=1 SV=2 (Range: 1051-1338)  ali follow..  10  101...................................................................................................GEISHPDGGCRVILFPNGTRKEVSADGKTITVTFFNGDVKQVMPDQRVIYYYAAAQTTHTTYPEGLEVLH------------SSGQIEKHYPDGRKEITFPDQTVKNLFPDGQEESIFPDGTIVRVQRDGNKLIEFNNGQRELHTAQFKRREYP-----HQETKYRSGRIRVKDKEGNVLMDTEL........................... 288
10 -6.480sp|Q3ZCW2|LEGL_HUMAN Galectin-related protein OS=Homo sapiens GN=GRP PE=1 SV=2  ali follow..  17  52..............................................................................................KKVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFTDRQRNSCISGERGEEQSAIPYFPFLCEHPRFRVFVDGHQLFDFYHRIQTAIDTIKINGDLQITK................................................................................................................ 170

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.