current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361), from B.fragilis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360
# Score Template Links and tools%idFirst MKPEKTAPVLAITPNEQIFLPKCYHRIQDICAVIYDQLTEIYKEKNYQDLYHTESILDGSETGMDELNKNKIHAIDWLTWNNKNKDLELILTKHIILSITSDFINFVFESLYCAKRGKITVAYALIRKPFTDELLILEQLLYNRSDFIYRFFHSDTVETYDPSSKNINKVDVIKNAVDCLTNPLFDADFVHDLRYNKLCEYGINGISNHALHIVTKNKNYRTEPQNFNFVFSQEEDFALYYKQYYWVVPYILIYAVDIIDKLIFSILKDTDNQNLSIVKRLRRTIGFSLFTESYLRTKKDSIFILFNKKIRFTCPICKNKYFLKRDDYEFFFETEAILCPKCNNDNLTIENIQKIKNIIGLLast
1 -10.100sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2 (Range: 601-900)  ali follow..  11  1..........................................................................................................................MASVGEP--DKLSMVMYL----TQFYEMFKDSLPSSDTLDLNAEEKAVLIASTRSPISFLSKLGQTISRKRSPKDKKEKDLDGAGKRRKTSQSEEEEAPRGHRGERPTLVSTLTDRR------------------------MDVAVGNQNKVKYMATQLLAKFEENAPAQSIGIRRQGSMKKEFPQNLGGTCYFCQKRVYVMERLSAKFFHRSCFKCEYCATTLRLSAY.......... 203
2 -9.200sp|Q9HB10|LIMS3_HUMAN LIM and senescent cell antigen-like-containing domain protein 3 OS=Homo sapiens GN=LIMS3 PE=2 SV=1  ali follow..  14  71........................................................................................................................................................................................................................................................................................................................TCERCKGGFAPAENSNGELYHEQCFVCAQCFQQFPEGLFYEE....... 115
3 -8.980sp|Q8IY33|MILK2_HUMAN MICAL-like protein 2 OS=Homo sapiens GN=MICALL2 PE=1 SV=1 (Range: 151-450)  ali follow..  13  15..................................................................................................................................................................................................................................................................................................NEGAGGPPPKTDQALAGSLVSSTCGVCGKHVHLVQRHLARLYHRSCFRCKQCSCTLHSGAY.......... 77
4 -8.890sp|Q9BT23|LIMD2_HUMAN LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1  ali follow..  15  39........................................................................................................................................................................................................................................................................................................................TCAACQKTVYPMERLVALIFHNSCFCCKHCHTKLSLGSY.......... 79
5 -8.820sp|P50238|CRIP1_HUMAN Cysteine-rich protein 1 OS=Homo sapiens GN=CRIP1 PE=1 SV=3  ali follow..  14  3........................................................................................................................................................................................................................................................................................................................KCPKCNKEVYFAERVTSKDWHRPCLKCEKCGKTLTSGGHAEH....... 46
6 -8.330sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=2 SV=2 (Range: 1051-1342)  ali follow..  5..........................................................................................................IEMAIETVGQKDELLTNQLIDHLLGEDAKYLFRLYMALKQYREAAQTGNYRNAHDVLFSMYAELKSQKIKIPSEMATNLMILHSYILVKIHVKNGDHMKGARMLIRVANNISKFPSHIVPILTSTVIECHRAGLKNSAFSFAAMLM--------------PEYRSKIDAKYKKKIEGMVRRPDISEIEEATTPCPFCKFLLPECELLCPGCKNSIPYCIATGRHMLKDDWTVCPHCDFPALYSELKIMLNT.... 260
7 -8.320sp|Q8N3F8|MILK1_HUMAN MICAL-like protein 1 OS=Homo sapiens GN=MICALL1 PE=1 SV=2 (Range: 151-450)  ali follow..  14  4...............................................................................................................................................................................................................................................................................................................QGTGQTPSSTCAACQQHVHLVQRYLARLYHRHCFRCRRCSSTLLPGAY.......... 53
8 -8.190sp|O94851|MICA2_HUMAN Protein MICAL-2 OS=Homo sapiens GN=MICAL2 PE=1 SV=1 (Range: 751-1050)  ali follow..  23  251........................................................................................................................................................................................................................................................................................................................TCYFCKKRVYVMERLSAHFFHRECFRCSICATTLRLAAY.......... 291
9 -7.940sp|Q5T1R4|ZEP3_HUMAN Transcription factor HIVEP3 OS=Homo sapiens GN=HIVEP3 PE=1 SV=1 (Range: 1501-1800)  ali follow..  15  238.......................................................................................................................................................................................................................................................................................................KSNEEYVYVRGRGRGKYVCEECGIRCK-KPSMLKKHIRTHTYVCKHCHFAFKTKGNLTK....... 299
10 -7.890sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1 (Range: 601-900)  ali follow..  10  4................................................................................................................................................................................................................................................................VVLRQQVQKYKQVFIEAVAKAKKLDEALAQYF---GNGTELAQQEDIYPAMPEPIRKCPQCNKDMVLKTKKNGGFY----LSCPECRSAVWLPDSVLEAS..... 99

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.