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Query: gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MADVKEKINLLDVIPFRSENITAEKGSDGTVTIAFPRFKYEWMRRFLLPKGMSADIHVRLEDHGTAVWELIDGKRTVRRIIEELAEHFNYEENYESRITAYITQLQKDGFVKLVIENLast
1 -14.400PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  17  70................................................IARRGDGQVVQLSRLLHLVASSVDGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTV..... 133
2 -3.970HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  34.........................................................VLLLAFIIDLFSIISTKQELDHAADQMVKQIQLSGGVNGETDELFEFLSSQ......... 84
3 -3.350PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  13  1................................................MFVAKELRKKSIAEYLLYMWQIED-GCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRM......... 64
4 -3.120PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  10  7....................................................EPGKGIVLKEYGKNIQKIVDWILTIEDLMRQLNPGVRDTEEHTTKLWDHLFIMSNFKL....... 77
5 -3.070PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  13  61....WDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGDSIWLTRDGGNLRAIG--NIRVELDGQTVLDTPVQSLVD.............. 161
6 -2.930PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  1...............MRVPRRSWPPRRFPPVLLSGAVTLKRMPQPVTALLAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGLTSRFPLAREEKRLIIRQLPRLSRRTRF...... 107
7 -2.790PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  202.......................................................QKADLVWPNWQARALYIDFWMLGDAARELPDNSWQKHRARELGNLVMNMFDPEDVSTVDKCR 263
8 -2.700PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  17  10......RPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKE---VPLQEVLTMIHTKEEGKDELEAYFFDVFQDYDEERVYPSDIKKIIQ-LAEKVPQVFKAET 130
9 -2.670PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  135................................................................PDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTAS. 186
10 -2.530PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  13  454.........................................................................NADRDYLFQKLGDEFTRTQLLENTALTWLKRLTKHGKLISMDGK 506

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.