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Query: gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPTIKKVQPVKVVAPFLNSQSESPVPLDALTDQEKVSDLYFLKGTVHQIAKPYLSINNCTFKQQIFSECQFKSAQLTDVRFENCDLSNVSFAGTTFYRVEFISCKLLGTGFLEATLNHVLMDHCYGQYINLSMVKMRTARFSHCNFRNGSLNDSKLMPAAFDTCELLEADFSHTSLKGIDLRNSRIAGIQLNIADLKGAIVSSLQAIDLLPLLGVKIEDDLast
1 -1.880PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  1........................................................MKKEQFEFNELPYPTLARFGLTQEMIEDLPLCILKGKGGYSPVLPMRVTNENGEVIE----SRFAFIRMDSGEVDVVFYPTLK-SSPLECYNEEQQKQLLDGKSIIADVAMADGRRSKAFVQ-IDEETKQVMYVPTPIVLAEVMHLGTVEVNGMQHGEPLTVAVD 169
2 -1.500PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  13  216..............................................................................................................................................................................................................IFIIYEIFGVRMREE 232
3 -1.470PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  10  17.......................................................................................................................FVITSCLDDDNNIPDATIHAFALDTAGLGSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKV... 118
4 -1.240PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  74.............................................................................................................................................................................KQTIKQLNAQGVQLSNIKITDENIK-------SFDRVARKYGIDLKKE 116
5 -1.120PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;  ali follow..  16  311..............................................................................................................................................TPLSFSEEGVNRFNIARAPGEVSNLGNALMTVSALRGMGYQDATVRNVFDLTDEGVAAQVVAAHTNYVLRTYGVNIHQE 396
6 -1.080PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  13  31..........................................................................................................VDALSFTEAEARIIEEMTPFISG-EFTVSDIKRANYSELFPSDEEWFKCKLIFITLDEKSGAEKKTSTQVLVQADLRDAVKKLDEGMKGTMADYQIGMVSETPLMDVYPYSAGPN 149
7 -1.050HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  57.....................................................................................TMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPT-------RKHNGILLTTPARTLLDCAVFPFQALPIYDSALRKSLTTIEEVQSLMI......... 177
8 -0.620HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  15  5....................................................................................................................................DFVKLSNLTI-GYTLPIRNNKYMKSLRVYVSGNNL----FCITGYSGLD-------ELDISNVQAPGVEYRDTYPTTRSFTFGVNIG.. 80
9 -0.561PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  11  2..............................................................................................TMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRR--LDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHG...... 120
10 -0.553PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  14  152.............................................................................................................................................................SGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAV. 214

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.