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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -4.680PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  14  114............................................................................................................VIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHN------VKLRLGEFSVSGSG-DLVFADLDCKNLTSKVSGSGDITLKGKADE.......................................................................................................... 203
2 -4.370HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  11  13..........................................................................................................NGVGNAASPVGAYAEWNYDNEVAYGTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTKVPGKTS-VQIYGQAPYTEGGLEKVAIQLLN----EKSSELAPGASEIVS-------KVDLQYIASYDMEHDNGDGTTGTYVLDP----YYFAAGNGAHDA.......................................... 174
3 -3.530PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  11  33.........................................................................................................SGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIEGCYEVEYQNGT-------------------------------VSFLGEGDLCVTDLSRQVFVSSRLPLRK--------------------YRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKL-----SEVDERIQAPYYWIK 186
4 -2.970PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  14  198.....................................................................................................................SSIFLSFISIFALTITFAYNSTFLNLAQIVRINTIRPNPNP-----NPNEI-----NFDLNNLPIENGLLTVFLQSKMELT---DTATVIIINNTAYVNINKNSVKHNNFAV-NYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVEVFSPKIPALYFVVNNSTKNIFSSVISSLSTNNPFTFTFDN........ 378
5 -2.910HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  11  61............................................................................................................................GEQSRNSKKHQANVKTARLYISHFIQVKESHKALYGLPVDNFSVPDLSSEASLAEWGQKEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLAWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRF---FKICLSIHIPIFFWKSLQKITFR........... 258
6 -2.820PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  13  2.........................................................................................................................................EKIISISGRGLFEVHTQTRTGVVATSARNQVSLLS---EINIYGLEK--EVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSD-------------IKKIIQWYNI................................................... 117
7 -2.700PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  11  3.................................................................KTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLTDQGEGIRVRLTELS-----GDNVQHNPDFYCMMDGTFQNTK-------IFKGEYNVRIDGPFIPLVRENTDGTLLHD----SVNTEISGTTKVKFEVQPFVGNPQVSNGVIKAQVRVTRGVS............................................................................. 163
8 -2.580PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  1.........................................................................................................................MKTTTTNELPAEIMENGIHYTLVGDYYF--------PTCMLGDKSPNGKWASYERYLQEKHPHEYVRLIWADELAALLESVQRECEEREAVLVREMAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCEEI......................................................... 126
9 -2.540PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  11  2.................................................................KKLLCMWMVVCGLLLIPGNMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQ----LEGDNALKNVAGSLAATEAEKKMKEYCAKVG---IVEGVFNY---VFNSDSTFTSALKRGSLKGTYSVSPEDKTVT----RYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTV---------------------SSISSNTTLKAINKLASEYDGMMLGFD......... 204
10 -2.260PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  12  185..................................................................................................................SYNSSVW----------GHYGQGHSGVCLI----FETNNEGEIPFLTGLKLKEVNYNGNFEEINFFESLGKIPQPLVESFYIDENKNKSILFDKVLNNQEEWRKLFWDKYEKNKLTKTKDWT-----YEKE---RIVLNRLMDYEIKLKYDFNCLKGVIF-GIKTPQNKKDEIIEIIINKCH-SKNIQHKKLDV... 380

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 8 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.