current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .
# Score Template Links and tools%idFirst MQGIKNLTQGPINKQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAVGSVGILTWMSGSISLLNKVGSEVSVGQSIGAQNHEDARNFASHNITIALIISLCWGGLLFLLARPIIGIYELEAHITENAIAYLRIISTGLPFIFLSAAFTGIYNAAGRSKIPFYISGTGLVLNILLDPLFIFGFGLGTNGAAYATWISQAAVFGIFIYQLRCRDALLGRFSFFTRLKKKYTHRILKLGLPVATLNTLFAFVNMFLCRTASEQGGHIGLMTFTTGGQIEAITWNTSQGFSTALSAFIAQNYAAGRTDRVIKSWHTTLLMTSIFGTLCTLLFVFFGNEIFALFVPEQAAYEAGGVFLRIDGYSQLFMMLEITTQGVFYGIGRTIPPAIISITCNYMRIPLAILFVRMGMGVEGIWWAVCVTTVAKGLILAGWFALIKRKVLSRPILLast
1 -2.520PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  14  1.....................PVCGAKVSLEILNYAEFASVTELYTDEKGCVSIT-------------IGLGDIHIRAVKDGFFAEAMGHVRTQEEITLIL.......................................................................................................................................................................................................................................................................................................................................................... 67
2 -2.460PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  12  1MNKRLNL--------YCTILLCIMSAVILYSFYAVSKDMVSGTAGVRSADIEAKIRNARAATISFKADLNAEPATFVNQKTGKPNYQSPRYFIAVKSLCYFVMVVLLITVLVLSFKLIARFRNSENIFLMRNLKLIRIMAFSILAYYIIWWGITLVEVY-AGSLDFPNGLFEIPFIFIIYEIFAIGVRM.................................................................................................................................................................................................................................................................. 229
3 -2.230PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  1.....................................................................................................................................................................................................................................................................................................ASYISVPRDLTKVK-SKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMK---------------TNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIF.................................................. 88
4 -2.190PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  14  44...............LILSLLGPAYLVFFADLQITAGMVWVAFLAVAAIFGLGSAAMYQAFMIGNISNKLVPAAIVAQSSIGAKAGSKRGDLAAVAIGGAATMHLLSLLIFVGFLGTWLVSL-VPVEVIEVARLYIMPSLMGAVLV-------QAIVSMRNVRATVVALGLAVVIQLLVVPA--------FPQLGMFATAVVVISSIIINWVVRDRR...................................................................................................................................................................................................................................... 243
5 -2.120HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  18  1.............................................................................................................................................................................MFSLLLSTFAMMGLTFVI-GFFVAGVIKLIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALS............................................................................................................................................................................................................ 69
6 -2.090PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  1.............................................................................................................................................................................................................................................MNEGIPEQLIRRLSDASRLVPLALLAVVAAVIYVWRPLFHGLIYSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDTDFPTVNEENPRIVPEAVANVQTKGSVSYRQHELGASDIART.......................................................... 166
7 -1.760HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  14  11MKEEDNILKKVGKKN---FKVP-------EGYFENLTSEVMGKLPEKEGPAFEEVKQPMMWIRMKPLLYMAAMFIGA.................................................................................................................................................................................................................................................................................................................................................................................. 78
8 -1.650HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  10  1MAQQKNEVQSLLEKAMFQAT----VADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRLQCGKVELPKVIEILRVS............................................................................................................................................................................................................................................................................................................................................................... 106
9 -1.440HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  11  97LEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGDMDMTRDEYSKMRGSSVREVSATHGTISF.................................................................................................................................................................................................................................................................................................................................................................................................. 157
10 -1.410PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  16  10.........GRFGCYLLLFACPIIFASIMKK--------FIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGEL................................................................................................................................................................................................................................................................................................................................................................................... 69

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 5 6 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.