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Query: gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPEKTAPVLAITPNEQIFLPKCYHRIQDICAVIYDQLTEIYKEKNYQDLYHTESILDGSETGMDELNKNKIHAIDWLTWNNKNKDLELILTKHIILSITSDFINFVFESLYCAKRGKITVAYALIRKPFTDELLILEQLLYNRSDFIYRFFHSDTVETYDPSSKNINKVDVIKNAVDCLTNPLFDADFVHDLRYNKLCEYGINGISNHALHIVTKNKNYRTEPQNFNFVFSQEEDFALYYKQYYWVVPYILIYAVDIIDKLIFSILKDTDNQNLSIVKRLRRTIGFSLFTESYLRTKKDSIFILFNKKIRFTCPICKNKYFLKRDDYEFFFETEAILCPKCNNDNLTIENIQKIKNIIGLLast
1 -4.790PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  15  37.........................................................................................................................................................................................................................................................................................................................STQYNDLFSYAIKRLER-FGEDKPACKHCPIHCYQPARREAIKAIM.. 83
2 -3.600PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  1....................................................MHIDFALPSNGTYNNAGSSRQLANYLEHEDLERMEKGLYTDSFFNLTENNI---KSKVIKDIDSNIGQLLYAIHVSPSEKELQAMGNTEHEQAESMKRYIREVFIPEYAKNGLSEADIKFYGKIHFNRSHSDNELNMHCHLIVSRKDQSNKKKLSPLTNHKNTKKGPIKGGFDRKSLFQQAKLGFGRLFNY...................................................................................................................... 198
3 -3.350HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  19  10......................................................................................................................................................................................................................................................................................................LKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRILPEHINCQGCRVD................ 74
4 -3.210PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  10  162...........................................................DYAGDERILQKAKKYEKWIENKPFERVLYEAIMESLGYKNNKKPFLMLASLVTAETIQSFVPE----YTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRENILSEHLDNGLFRYILRIFQKRDDTKKNTRGFKSFVNEFLSPFLETHD--AYWSYRYTIIPVMLVYARK--KALEERLHYIYRNYTPHPSTSVTKFMGTRIFGTSMVSNKVIHSARRQQGLYQLFKDFCENDTI---------------SCNKCA.................. 471
5 -2.920PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  11  53....................................DIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEG---VDEAWAVFDKD----FEEAEKLIDDKKVNIAFS---SRSFE------YLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKE---NCPIYDRNPYTNVDKLVCRL.............................................................................................................. 259
6 -2.420PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  10  1........MKRFPGRDMRSLTELVLGRDKFRTALCCSVVGMLLTL----LFLSSCHYTRPDLTSEELSEKTKDSLNYLYDRHYTWNTNLEVTTD---SVTMECLPIKDTYIALYKGDRVVVAFAIHPADSVDSVWV-----IRETELKESFVPTDSISQAIHFFSDTHASYFMIIFALFVGVYLFQLQLVYFNDIDSVYPLFLCLLMAFSATVYESMQVFVPDTWE-HFYFNSPFKVPFILSVFLLSIWLFLIVALAVLDDLFRQLTPAAAVFYLLGLMSSCIFCYFFFILMTHIYIGYLFLAFFIWVFAKYRCGHCGEKLKEK-------------ICPHCGAIN............... 343
7 -2.290PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  10  1................................................................................................MTLLGDKTASPYDT-ERPVVPRLSAGLKLHGEYQGSGFTEPKYIARRGDG--QVVQLSRLLHLVASSVDGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSDLLLALKGHRVIFNERRVAGALAWLHRPVVVLAVLAGIAVLDVW.................................................................................................. 194
8 -2.270HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  1........................................................MSREKRKAKKEAEKRLSTRQFIGAKEITDYSLVTYGQGELVYFIVKPTNI--SVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSQMEQEENPVIRRLLE--QDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKE................................................................................................................................................. 156
9 -1.930PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;  ali follow..  11  1MKEKKSNGEDKILKQDMSQTADHPGMIFMVHLLMEEKCKEHIHKIMCEHLGETDCFCYDGNMAGFAPQKYSVHYEK-ATQLWNCPNGGEILETCKYQVMATDMLAAGLDYKERAEMLVNYVEALVNIYPSCKAVVF-SKKMLTREDILNCTLPKEMRFLHYAVNIRFFNIQ--DMLVDSLGMSTLFLPDVQYHFHDLNPNDVVNHAYNVLSYIYDNDNPIE-DGNTIAGLTDGNMNSDIKWKVQYE................................................................................................................... 276
10 -1.900PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  16  24..........MIIGTPLSIAESYVHKNMGEILQQTMSITQIRIKPTDKNKLFLNI--------------NHINVSDWFKEQRMKQRQKIVRVQSSNDSILLDF----------SKKVKFNAALNLA........................................................................................................................................................................................................................................... 123

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 4 6 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.