current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .
# Score Template Links and tools%idFirst MKTAIIVISEAGIALAKTLEQELPESEIFSTGTDTDCHSISNLQEAVPEIFHKFDAIIFIGAMGICIRAIAPHIEDKHKDPAVVCVDSTGRYAVSVLSGHIGGANGLTRYVASILGAEPVITTRSDRTGLWALDTLGKKYGWQTVPAESSDMNHLITLFVDCKPTALLLDIRDEGTTQLEHTLPPHVDVFYKFEDMDLRKYDLLLLVTPFIYNTSDTPALYYVPPVLHMGVGLARDAHPVDTVITHLMDVVVQANMIPLAIRTVSSIEEKKDEPVLKLLAEAYQTRLYTASQLSKIEVPTPSEVVNKHMGTPSVSEASALLSSGGGPLLLPKQKGANFTVAIAMDAASVRQGHIEIVGAGPGDPELISVRGRHFLEEADLILYAGSLVPRELTECAKAGATIRSSASMTLEEQFALMKEFYDRGQLVVRLHTGDPCIYGAIQEQMNFFDQYGMHYHITPGISSFQAAAAALQSQFTIPERVQTIILTRGEGRTPMPEKEKLSLLARSQSTMCIFLSAGVVDQVQRELLEHYPPTTPVAACYHLTWKDERIFRGQLQDLAKIVNENHLTLTTMIVVGDAIDNREGLSRLYSHQFKHLFRKLast
1 -2.690PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  10  1MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLT----------QGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKI----KGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEI-TTKVKFEVQP----NVEFVGNPQVSNGVIKAQVRVT........................................................................................................................................................................................................................................................................................................................................................................................................................................... 159
2 -2.230HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  12  6LREIFLSVILAGAGVSAGVFAFVLVIGVVPR-----------LRCSRIENIILIENVMICGVVGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKALGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 146
3 -2.120PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  7............................................EAVGEKTTTNKMTMTVMESSVRFSKGVTEALGCPAYVKLLVNDKQKKIAVQACDAXDENAIKFCKTKRSKADGVDSDAAGKTVRTTDVLVAVQKYFTFPPVADDQIAYFAMDGESYPDEKVVIFA.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 135
4 -2.020HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  11  4....................................................................................................................................................................................................................................................................................................................................................................................................HKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGE-LVSPYKN---LYTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSL-HDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGES............. 203
5 -2.000PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  3...........................................EELVRCIWFGIEKKNLRTDDGLRLEILSPGWWNNEEGPAEFFLEGKGSVEIHVFAKHENQKDAVCLHVVMWNDLKGRCVKNFSGKVIPQITL---------------------SLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMRKQKITQQWIGGFL----------------------------YAGDERILQKAKKYEKWIENKPFERVLYEAIMSLGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANI................................................................................................................................................................................................................................ 309
6 -1.730PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  40ISKAMMELNPNLFMKDLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSYELLMKQKSTVSGSEVYVNRKGSKVKE--IMVMNGASSLKFVYMEGDMT-----TDDIKKLMLY.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 152
7 -1.710PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  15  71............AKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLI-----------------QTGVTTFQLIKNLRSGWRAF-DTTAGLFDIE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 162
8 -1.660PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  12  151.............................................................ASGSAFEDIDMAVRAEMRHAGKVMTELDGTELYSRITERLTDE-PMSERLAKAMA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 213
9 -1.610HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  1............................................................VVVSILFQKARKVLNNERGEANYF------STVVFIF---------AVLLLAFIIDLFSIISTKQELDHAADQMVKQIQLSGGVNGETDELFEFLSSQIEGAENISYSIDA............................................................................................................................................................................................................................................................................................................................................................................................................................................ 97
10 -1.570HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  10  17........................................KQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLMKHRDIDFHIYSSPLNLTDSFQAMARLAENPSIKRIECANLLHTAE-AWYQNEENELWQMDMIHIREGSRYDGYFEKVAQRISEIMTDEIRETILR.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 155

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.