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Query: gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILIIEDEPSLRELIQRSLEKERYVVEAAADFQSGLRKIEDYDYDCVLLDIMLPDGNGLNLLEQLKKMRKRENVIIISAKDSLDDKVLGLELGADDYLPKPFHLAELNARIKSVIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIELNRKEYDILLYFANRPGRLVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKMTVELast
1 -2.870PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  73......DGGEVIGVKIGTDGAVGSYTLDSDGKPTTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYK------------NVQLNLEHQLVKFRVKLNGDVPSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVNKVDIP.................. 266
2 -2.740PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  12  42.......................................................GITNIRFLPDVANFKRLFKVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIKKNCRTQNDVQAYLFMYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMT---------EKTVHDVCTKTVWKADDVHKTAAAVRQYKERL...................... 180
3 -2.500PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  11  105.....................................SQLTQWPVQIKLAPVNAPYFDGAKLL-----------IAADCTAYAYASFHEKFIKGHVTLIGCPLDSVDYSEKLTEIIRRNDIQS---VTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRIL........................................................ 223
4 -2.390PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  157...............................................................KKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKLNREHVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFNVTLKLNGEDAGKVDGSSVLQWI-ADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADG-GWSIDSS 337
5 -2.160PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  10..................................................................................AEQQRLEAVTAQVADVEQS--AAEKQKKKLEALQKETKAARATALTVQDIE---AMGKKATFGNNITLTPDECRTLKDYAVSKAEKLKYKQKYEQAEKSASVWKRRFEALNEKYLELKKKAQP.................... 137
6 -2.080PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  136...LVVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPF------VEGLEALETLQDGDR---VLISEACNHNRITSACNDIGM--------------VQIPNKLEAALGGKKLQIEH------------AFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMYGVFFSWAAWPDALRRALEPWGVEPPVGTPATPAAAPATAA...... 328
7 -2.000PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  3........................................................LDGFEAVG--EKTTTNKMTMTVMESSVRFSKGVTEALGCPAYVKLLVNDKQKKIAVQACDAXDENA....................................................................................................... 66
8 -1.920PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  12  143.........................................................DYLRMLKKLGQDLRNPKNICPEDFMA-----------AHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVF-GSGYYKKADTL---ILSARIGVEVDLRTLEVVQCHG........ 293
9 -1.910PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  77...LKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKIVKFPHNVKLRLGEFSVS-GSGDLVFADLDCKNLTSKVSG--------------SGDITLKGKADEARYS................................................................................. 207
10 -1.830PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  287.DFSYYLDYLNLMRDLNIAIDSE--NIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSVGGSNYIKQHIEGKTTII----FVRDKQDLEKSLYT---LEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQ.................................................... 451

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.