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Query: gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIILKQDDSCQVAQTTCTTNSLEIRYKDYSVLKKTLDLNTKSINSNSCIELIIYGTHGNEKEICKLTKPDIKDLSYFFKGKVCRLVLDACHSACHIPHFKEMLTDDGIILCHVGICQVNSIETKTGKDTYERWINGNKEGLKVWSDGIVPAIYTRKNNTLTYYECSKFEVDINHPFTGTEFKTYCLNLKSKGIKMVIKNHSDFDKILast
1 -3.480PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  12  61...................................................................................................................................DSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFE-EILSTLQEEEVPSWIRSLQMRQIQM........... 124
2 -3.350PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  11  15............MILFSCEHKELCFHHPHMVTLRVDFDWKNAPQADPEGMCVYFYPEEGESPIRFDFAGKDGGSVE-IKEGRYRILCYN...................................................................................................................... 90
3 -3.280PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  16  198....................SSIFLSFISIFALTITFAYNSTFLNQIVRINTIRPNPNPNPNEIFNFDLNNLP----IENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINSVKHNNFAVNYLKSEENNWYLTGRD-EKFFKDDVIPALYFVVNNSTIFSSVGISSLSTNNPFTFT........................... 375
4 -2.770PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  10  121IVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDE--------VIIKNGDKETPVVVQTKKPDIRGVLVVAQGQIKKTIIEAVTRVLDVPSHR.......................................................................................................... 219
5 -2.580PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  7...........AYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCY----------EVEYQNGTVSFLGEGDLCVRLPLRKYRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNEL--CGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTMEL........... 190
6 -2.570PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  23  3...........TIQANPSGTRSMEISIEKYSLFQHLIDSN--GIVDEAVLEKLKL----NIRSLIASQEEDSKDL------------LDLCIDVIYHNNMKAF........................................................................................................ 82
7 -2.350HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  21  21LLLIGKRKDEDDMAKSTKTQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQIGGAVESVLGCPIEEEDLPKLIGFLKRQETN.......................................................................................................................... 117
8 -2.180PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  11  93.....LDEGSETTYAKVWQAIMFEDTQNDYDYNDLIIHVKNTASNHTIEIQPIALGSIKLGCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPGLAVSNGNGTFSYPQEKNSLFETYP----GFSDWING................... 289
9 -1.930HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  25  85......PGDPCEAASRVARANGAEVT..................................................................................................................................................................................... 104
10 -1.840PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  14  4.....................................................................................................................IKGEPGKGIVLKEYGKNIQKIVDWILTIEDELMRQLNPGVRDTEEHFIMSNFKLDVDTPYERVPYNHNKLKYKHYGINLLIEQAILKED. 126

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.