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Query: gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CYSTPDGVMSSLSQAEKIMESRPDSAMAILQHIPTPETLHGKAQADYSLLMTQAMDKNYINFTSDSLIKFAVGYYGGHTEDLVAKGKSFYYYGRVMESLDKVEDAMTFYLKAKDVLQSSDQFKLLGLVTEKIGDLNRRQKLLDAALNDYKESFDFYASIPDSLCMLYAYRNLGRGFLYKNQIDSAYYYYDKALYILNLKKYSAVGSILLELGVIHRSEKDYVGAEQYFLSFIEKEKDPEKLFSGYLALGNLYLYMDRLKDAERYLLLCLGSSNLVIKRDACECLYDLEKELNNFKGAIGYKDIADSLRIITQDIDIQNSIATLQSRYNSEKWQRESLQSSIEKKNILLISSFVSFIAIMVIIYIYYKYRTNQKLVKDINERIRKNDADIKMYQRQILNYQDLQRETLQDYRNQIGELHGKMSVLEDQNKALSLRLTEKKHDIPESEADDLYAIYMQALHILIMLRGKNIENTSGKKLLLDADWDKLFHLSNAIHGDFITRIKNDFPTLTKHDIEICCLLRFGIEHEVLGSIFLTETDSVTKAKRRMKKRLNLSASDDLDVFLLKYLast
1 -5.710PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  68......................................................................................................................................................................................................................................................................................................................................................................................KSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGELYSRITERLTDEPMSE--------------RLAKAMAVFVDTVNTTVAQPKTK-VFVVLDNIEEFIRNN 245
2 -5.310PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  10  1...........................................................................................................................................................................................................................................................................................................................................................MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYVDAVSRVVTPDDLDNAGNVLF-------KLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGKYLD-TKSVVPVSDWKQY 223
3 -3.960PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  11  68......................................................................................................................................................................................................................................................................................................................................................................................KSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGELFTRITE---RLTDEAMS-----------ERLAKAMAVFVDTVNMTVTQQKEK-VFVIPDNIEEF.... 240
4 -3.830PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  17  268......................................................................................................................................................................................................................................................TLARVYVEQKNFSKAK----------------QAYRILSLKYPEKSGF-----FADQIRAIEKLQEN............................................................................................................................................................................................................................................................ 313
5 -3.760HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  22...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ADFWMAGLELGVIKTNQRDEASPKEVCSG----------IGVKGLAGFLGTSVSTVNRWKLQCGKVVIFELP-KVIEILRV. 105
6 -3.690PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  99...............................................................................................................................................................................................................................................................................................................................................................................LMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGL-EEIIVKVLESIDEYYNETQGICVILSARIGDEIIETVVDLRTLEVVQCHGKHNQDT--EYHERIIDLVNKN 312
7 -3.440PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  11  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................MKLSQQSLSTIESAIQKAAGKYVCGCDQTAVTDIHLQPDQTSGQLTIYNDDDEELANVMDDFMENVKPNLKSTLCRMKDAGD--YSFVLVDEDKETVAELLLIDDDTLL-----VDDELLKGLDKELDEFLKNL 145
8 -3.230PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  13  25...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GLEYDKALKLAEELPEQFF--PETATWGLCWHE-------KWGLPVQ--------ENLSYQERRQAIYEKRDYHSPMTMERYLENA 97
9 -3.150PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  13  28.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HEDLERMEKGLYTDSFFNLTENNIIKDIDSNIGQLLKTDAKFYAIH-VSPSEKELQAMGNTEHEQAESMKRYIREVF-------IPEYAKNF 116
10 -3.130PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  11  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MKRKVKSIRKTMWGVYWKLHDKRKRLVERLKGYLDGLPPETCRRIVLGML-FAVLALRAAYDIGRNDGSRMETGHAGRVELPTPAETDNHLTPY 99

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.