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Query: gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415), from B.fragilis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAESKNNKKRCSFCGRSENEVGFLITGMNGYICDSCATQAYEITQEAMGAGKQSAGATRLNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDKAVEYKLGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLDYAKHQLEKANLARLQTALast
1 -5.350PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  10  62...................................................................PEFLQRIIKAGSSPIQHDIMLLGAACMSRHVRCLYGGKYHHPSL----CFVVAPSASGKGILIRLLVEPIHDEIRKEVTIQMKA--ISGNNTGTGILQNIMDSD------GTGLICEAEADTLSTAIGS-------DHGHWSDTLRKAFDHDRLSY-----NRRTDQEYREVKKSYLSVLISGTPSQVQTFIPTAED--------------------------------GSYSRQLCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTFERSSVANGREMYSFVARL...................................... 362
2 -3.840HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  10  2..................................................................NDLIVDVKLWGESVGSLYWEKESNAALFDYERKIRSGLDISPIIMPISQYRNTPPDTFGNQIINEWFASKGLSGEEITPLDRLCYVG------KRGMGALFEPSSPINGMNESSVLHIEELTELAKSVFTDRMAFQVQLRQEGRNILDILK...................................................................................................................................................................................................... 170
3 -3.670HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  20  1..............................................................................................................LEDGDFVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPE............................................................................................................................................................................................................................................................... 50
4 -3.410PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  11  1..............................................................................LIAPDGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGV----APAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWIGLAGHQPGLGEVYISTGSLYLCTTAFLPL....................................................................................................................................................................................................................................... 104
5 -2.250HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  13  1................................................................................................................................................................................................................................................................................................................................MDMTDNNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRRIS-GFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMV............... 98
6 -2.160HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  69....................................................................RALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARL---NGILLTTPARTLLDCAVFPFALPIYDSALRKSLTTIEE---VQSLMIQSVCDEVSVTKLLKYANP-------------LSENGGESLMRGQI.......................................................................................................................................................................................................... 209
7 -2.040PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  13  67...................................................................PMDAETPGGRLLRPQAQVMEATVLSVRLDLDAARGKLGPEACEMERQ-----------RFDGVIAMMERNDGPLVVTDSQAIDVVHPWTLDRSSSIAMAYQQNGGRLDPFVEGLEALETLQEACNHNRITSACNDIGMVQIPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLHEAG.................................................................................................................................................. 282
8 -1.970PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  11  1..........................................................................MHRSISGSD-----------------------------------CGPTPTSSTLPLSRIARVASLLSAGVLALVLLSCDGVGDFGD------TNEDPTTANDPNPDLEFTTLQLGVSGSRFDMWRTNLIYTMPIVQHIAN--------------PGFYAGNFNQYVGAWSASFFDTRYGGGPNGSNFLRTVTNAETLISELEGKPRQVNRLAATRIMRVLTFQRLTDVYGDVPYFDAGKGALEGEFTPHYTRQD-SIYMDLHDELRAAVDQFDASQPTF.............................................................. 235
9 -1.830PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  11  8........................................................................................................................................................................................................................................SETVMVIDVAYLNFVINDLRKYFEPLLGRSLQTVDLAMDAGLKGSDNDVQVLLVYDKQSGKLEHCLPSDLKNELDGVAFKASLGEFSFMAAPSEGFVS-----RGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKE-----VENVLRECALENAGHKEEAKDIVYFRMEEPAA.......... 177
10 -1.810PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  10  30................................................................................................................................................................................................................................................................................................PVTALLAAMITPAVL--ISGAGTLIMSTSTRVGRATDRVR-GLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRAL......................................... 112

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.