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Query: gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343], from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MKREVAKHPHVLDNNIPMFYLKTSGCCCVKHPDVFIPLFYSYHLWKMKRLSLSYLVLLSIQVLFVTFVHFENIKLast
1 -10.500sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1  ali   25  28......................................LWQFYLSKMISMDIEQVITLSLALLAVKYIFFEQTE 64
2 -8.670sp|Q9NZS9|BFAR_HUMAN Bifunctional apoptosis regulator OS=Homo sapiens GN=BFAR PE=1 SV=1  ali   43  12.....................................LFLLYALKSSPRLSLLYLYLFDYTDTFLPFIH..... 43
3 -6.080sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5  ali   33  4...................................MPFFYDYHFNENKMKELELLCSMK............... 27
4 -5.630sp|Q9Y2G8|DJC16_HUMAN DnaJ homolog subfamily C member 16 OS=Homo sapiens GN=DNAJC16 PE=2 SV=3  ali   26  22........PDLTDELAPVFLLRWFYSASDYISDCWDSIFHNNWREMMPLLSLIFSALF---ILFGTVI...... 78
5 -5.560sp|Q92902|HPS1_HUMAN Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2  ali   27  30...................NVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLM........... 73
6 -5.450sp|Q8IYR0|CF165_HUMAN UPF0704 protein C6orf165 OS=Homo sapiens GN=C6orf165 PE=2 SV=2  ali   18  29..............................HIPPTIVRSYEWNEWELRRKAIKLANLRQKVT............ 61
7 -5.390sp|Q9C0E2|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2  ali   25  109................................HLLSPQMGKDIVWFLKRWAKTYLL.................. 132
8 -5.110sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3  ali   30  35....................VHNIGCCCMDPKSVIIPLLHAFKLPALKNFQQHILNILNKLIL........... 78
9 -5.110sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2  ali   14  11..........VCPRDASHFPEPDTHSVACRQPKLCAGSAYHKEPWKAMEKA....................... 51
10 -4.980sp|Q68BL8|OLM2B_HUMAN Olfactomedin-like protein 2B OS=Homo sapiens GN=OLFML2B PE=2 SV=2  ali   30  80......................TSGCACVAPPSALNPCEGDFRLQKLREADSQDLKLSTIDMLEGAFYGLDLLK 136

FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 7 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.