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Query: gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343], from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPTIKKVQPVKVVAPFLNSQSESPVPLDALTDQEKVSDLYFLKGTVHQIAKPYLSINNCTFKQQIFSECQFKSAQLTDVRFENCDLSNVSFAGTTFYRVEFISCKLLGTGFLEATLNHVLMDHCYGQYINLSMVKMRTARFSHCNFRNGSLNDSKLMPAAFDTCELLEADFSHTSLKGIDLRNSRIAGIQLNIADLKGAIVSSLQAIDLLPLLGVKIEDDLast
1 -10.800sp|Q6NSW7|NANP8_HUMAN Putative homeobox protein NANOGP8 OS=Homo sapiens GN=NANOGP8 PE=5 SV=1  ali   2..........................................................YSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTM-YSMNMQPEDV....................................... 129
2 -10.500sp|Q9H9S0|NANOG_HUMAN Homeobox protein NANOG OS=Homo sapiens GN=NANOG PE=1 SV=2  ali   2..........................................................YSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTM-YSMNMQPEDV....................................... 129
3 -8.830sp|Q6PIJ6|FBX38_HUMAN F-box only protein 38 OS=Homo sapiens GN=FBXO38 PE=1 SV=3  ali   1..................................................................................EDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCKMMFIHATRCR---------VLKHLKVENAP---------IVNRFDYAQC---------KKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKL....... 106
4 -7.410sp|Q8N7R0|NANG2_HUMAN Putative homeobox protein NANOG2 OS=Homo sapiens GN=NANOGP1 PE=5 SV=1  ali   2..................................................................LVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLQAALEAAGEGLNVIQQTTRYFNTPQTM-YSMNMQPEDV....................................... 121
5 -5.400sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4  ali   64..................................................................................................................VSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAPESHILASNTMETHILASNTMDSQMLASNTMDSQMLASNTM........................ 146
6 -5.310sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein OS=Homo sapiens GN=PRIC285 PE=1 SV=6  ali   21  6..................................................................................................................................................................................ARELGSGDTLQVQLGTSLQHGFLVPSPQLWTVAPGFSLCLEH. 47
7 -4.840sp|Q8IZF4|GP114_HUMAN Probable G-protein coupled receptor 114 OS=Homo sapiens GN=GPR114 PE=2 SV=3  ali   26  32.........................................................................EQMLLNTSFPGYNLT---LQTPTIQSLAFKSCDFSGLSLTSATL........................................................................................................ 73
8 -4.260sp|Q9ULV3|CIZ1_HUMAN Cip1-interacting zinc finger protein OS=Homo sapiens GN=CIZ1 PE=1 SV=2  ali   3....................................................................................................................MPPATYDTAGLTMPTATLGNLRGYGMASPGLAAPSLTPPQLATPNLQQ-QATRQSLLGPPPVGVPMNPSQF.................................. 75
9 -4.140sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2  ali   16  3.................................................................................................................NASLQDHIYPSCFGNTPEWNSSKFISL-WGSEVMNDKNWNPGTFLPDTISGSEILGPTLSETRPEALPPPSSN................................... 74
10 -3.860sp|Q6AI12|ANR40_HUMAN Ankyrin repeat domain-containing protein 40 OS=Homo sapiens GN=ANKRD40 PE=1 SV=2  ali   12  20...................................................................................................................................................................KVRIQNPSLRENDFIEIELDRQELTYQELLRVCCCELGVNPDQVEKIRKLPNTLLRKD 77

FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 7 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.