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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343], from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -6.050sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1  ali   17  25........................................................................................................PNKNVYQILFPDGT-------GQIHYP------------SGNLAMLIAKMKKFTYIILEDSLEGRIRAL------INNSGNATFYDENSDIWLNLS-----------------SNLGYYFPKDKRQKAWNWWNLNIHVHAPPVQPISLKINEYIQVQIRSQDK............................................ 147
2 -5.340sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2  ali   12  2...............................................................................................................................LMDLSPWRAKLQEIKSSLDNHTEVVFIADFP-------------GLHLENFVSEDLGNTSIQLLQGEVTVEL-VAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCY---MYVYVNTTELALEQ........................................................... 109
3 -5.140sp|Q8ND61|CC020_HUMAN Uncharacterized protein C3orf20 OS=Homo sapiens GN=C3orf20 PE=1 SV=2  ali   18  2............................................................................................................KFHYTFYDGS-------SFVYYP------------SGNVAVCQIPTCCRGTCLFNDIPGFSLLAL-FN---------------EGQGCVHYNLKTSCPYVLILDE----EGGTTNDQQGYVVHKWSWTS-----RTETLLSLEYKVNEEMKLKVLGQDS............................................ 120
4 -5.090sp|Q8NFR9|I17RE_HUMAN Interleukin-17 receptor E OS=Homo sapiens GN=IL17RE PE=2 SV=1  ali   16  12....................................................................................................RVTISSGPEVSVRLCHQWALECEELSSPYDVQKIVSGGHTVELP-EASYDTVRRKKCPFQSWPEAYG-SDFWKSVHFTDYSQHTQMVMALLKLEAALCQRHDWHTLCKDLPNATARESDGWYVLEKVDLHPQLCFK........................................................................... 163
5 -4.870sp|Q6ZRH7|CTSRG_HUMAN Cation channel sperm-associated protein subunit gamma OS=Homo sapiens GN=CATSPERG PE=2 SV=3  ali   16  844.....................................................................LMETSMTVNVVGSSGLCFQETHLGPHMQGNLMVPVFIG------CPPGKRLAFDITYTLEYSR----------KNKHYFDCVNVNPEMPFLIQQGSYVLLVVGTLDSLKDYSEDEIY---------RFNSPLDKTNSLIWTTRTTRTTKDSAFHIMSHE-SPGIEW----LCLENAPCYDNVPQFAPEFFFKVLVSNRGVDTSTY--------QLTFLLHI..................... 1056
6 -4.420sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2  ali   1............................................................................................................................GQVLDVVERLVTPGETPSWTGSGFVRLQEGQTLEFLVASVPKAMDYLLLRLEPQVPEQWAELELIVQHSLCGHLVPKDDRIQGTLQPHARYLIFPNPVCLEP----------------------------GISYKLHLKLVRTGGSAQPETPYSGPGLLIDSLVLLPRVLVLEMFS........... 156
7 -4.380sp|O14525|ASTN1_HUMAN Astrotactin-1 OS=Homo sapiens GN=ASTN1 PE=1 SV=3  ali   18  3....................................................................................................TLHVPEADGSRFILLEGSQLWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDP---ETGRREHRAAGECLCYEGYMKDPVHKTIFQRGFDLVLGEQPSSKSFVIPPAELAINPSAKCKTDMTVMEDAVEVREELMTSSSDSLEVLLDSFG........................................................ 197
8 -4.280sp|P52747|ZN143_HUMAN Zinc finger protein 143 OS=Homo sapiens GN=ZNF143 PE=1 SV=2  ali   13  6..........................................................................................................GNTITMVTQDGTPITVPATHSVAMVTAEGTEGEQVAIVAQASSEMGHQQHSHHLVTTETRPLTLVGTQIAVQLGEQPS------LEEAIRIASRIQQGETPGL...................................................................................................... 122
9 -4.200sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1  ali   10  3........................................................................................................................................PGNPVTWTGPGFARVLPGAGLRFAVN----NIPFPVDFTIAIHYETQSAADWTV---QIVVNPPGGSEHCIPKTLQSKPQSFALPAATRIMLLPTPICLEPDV------------------YSIDVYFSQPLQGESHAHSHV-----LVDSLGLIPQINSLEN............ 136
10 -4.200tr|D6RB01|D6RB01_HUMAN Uncharacterized protein OS=Homo sapiens GN=FAM169A PE=4 SV=1  ali   15  1...............................................................................................................................MAFPVDMNCSHEELENSAEDYMSRCGDPENPECFSLLNITIPISLSNVGVPLYGGDQTQKILALEGLKQVSTLGERVVLYVLNRKQEMERNEIPFLCHSSTDYAKILWKKG----EAIGFYSVKPTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRAL....................... 198

FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 8 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.