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Query: gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447), from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQGIKNLTQGPINKQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAVGSVGILTWMSGSISLLNKVGSEVSVGQSIGAQNHEDARNFASHNITIALIISLCWGGLLFLLARPIIGIYELEAHITENAIAYLRIISTGLPFIFLSAAFTGIYNAAGRSKIPFYISGTGLVLNILLDPLFIFGFGLGTNGAAYATWISQAAVFGIFIYQLRCRDALLGRFSFFTRLKKKYTHRILKLGLPVATLNTLFAFVNMFLCRTASEQGGHIGLMTFTTGGQIEAITWNTSQGFSTALSAFIAQNYAAGRTDRVIKSWHTTLLMTSIFGTLCTLLFVFFGNEIFALFVPEQAAYEAGGVFLRIDGYSQLFMMLEITTQGVFYGIGRTIPPAIISITCNYMRIPLAILFVRMGMGVEGIWWAVCVTTVAKGLILAGWFALIKRKVLSRPILLast
1 -4.030sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2 (Range: 895-954)  ali follow..  19  18LRNDTLLCNGKFHKHLQEIFVPLVVRYVDLMESSIAQSIHRG..................................................................................................................................................................................................................................................................................................................................................................................................................... 59
2 -3.810sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=3 (Range: 797-853)  ali follow..  25  33.........................................................................................................................................................................................GYEASIAGSAIATLQKELSA.................................................................................................................................................................................................................................................. 52
3 -3.680sp|Q9P2D8|UNC79_HUMAN Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=3 (Range: 123-360)  ali follow..  1.....................PSLYQGLYVTLVTLLDLVPLLQHGQHDLGQ-SIFYTTTCLLPFLNDDVLSTLPYTMISTLATFPPFLHKDIIE------------------YLSTSFLPMAILGSSRREGVPAHVNLSASSMLMIAMQYTSNPVYHCQ------LLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFH..................................................................................................................................................................................................................................................... 157
4 -3.420sp|O76024|WFS1_HUMAN Wolframin OS=Homo sapiens GN=WFS1 PE=1 SV=2 (Range: 653-890)  ali follow..  52FKYVRVTDIDNSAESAINM-LPFFIGDWMRCLYGEAYPACSPGNTSTAEEELCRLKLLAKHPCHIKKFDRYKFEITVGMPFSSGADGSRSREEDDVTKDIVLRAEFKSVLLSLRQGSLIEFSTILEGRLGSKWPVFELKAISCLNCMAQLSPTRRHVKIEHDWRSTVHGAVKFAFDFFFFPFLSAA..................................................................................................................................................................................................................................................................... 238
5 -3.360sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1 (Range: 385-541)  ali follow..  76............................LGKLLYLLDGMLDGQVN-SGIAATPASAAAATLDVAVRRGLSHGAQRLLCVALGQLDRPPDLAHDGRSLWLNI.......................................................................................................................................................................................................................................................................................................................................................... 147
6 -3.320sp|Q4AC94|C2CD3_HUMAN C2 domain-containing protein 3 OS=Homo sapiens GN=C2CD3 PE=1 SV=4 (Range: 907-958)  ali follow..  19  4......FKDAKISRLLLDAQYPVVAVDSYMPVIDVFSGHQNGSL--RVFLAMGSS........................................................................................................................................................................................................................................................................................................................................................................................................ 50
7 -3.310sp|P78386|KRT85_HUMAN Keratin, type II cuticular Hb5 OS=Homo sapiens GN=KRT85 PE=1 SV=1 (Range: 1-97)  ali follow..  18  48........................................LTGFGSRSLCNLGSCGPRIAVGGFRAGSCGRSFGYRSGGVCGP............................................................................................................................................................................................................................................................................................................................................................................ 90
8 -3.270sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 (Range: 1102-1190)  ali follow..  10................LHFTLEPEAASLLLQLRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLA............................................................................................................................................................................................................................................................................................................................................................... 89
9 -3.230sp|Q86VV8|RTTN_HUMAN Rotatin OS=Homo sapiens GN=RTTN PE=1 SV=3 (Range: 1605-1821)  ali follow..  12  1...............LCVFVTPSLLSAMCSLLDNLLTIA------RDTAKAFRQAHLIELLCSIADATLIQTCVQELRALLPSSPPAEHTQAQVSFLLEYLSSLSRLLQSCLLVEPDLVIQDELVKPLITNIIGILTICTKDVTWTHLFNLLAMLLRKAGAITLPFVTVALAKHWTAAID-MFCTCAGLSATCPALYTASLQFLSVLL............................................................................................................................................................................................................................................... 198
10 -3.210sp|P32780|TF2H1_HUMAN General transcription factor IIH subunit 1 OS=Homo sapiens GN=GTF2H1 PE=1 SV=1 (Range: 456-548)  ali follow..  2IQSELKHLYVAVGELLRHFCFPVNTPFLEEKVVKMKSN--LERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQSRRLMKKT................................................................................................................................................................................................................................................................................................................................................................... 93

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.