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Query: gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343], from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILIIEDEPSLRELIQRSLEKERYVVEAAADFQSGLRKIEDYDYDCVLLDIMLPDGNGLNLLEQLKKMRKRENVIIISAKDSLDDKVLGLELGADDYLPKPFHLAELNARIKSVIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIELNRKEYDILLYFANRPGRLVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKMTVELast
1 -32.100sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2  ali   15  19IDILLVGDVTYLADTVQKLFANIAEVTITISDTKEAAALLDDCIFNMVLLKVSSLSAEELEAIKLIRKKNTHSLFVFIIPENFKGC----SGHGMDIALTEPLTMEKMSNVVKYWTTCPSNTVKTE................................................................................................... 147
2 -5.620sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2  ali   12  54.....APHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDF------------------------------SEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKP----LKQKQIVDRVSYLLQEIYG........ 233
3 -5.410sp|Q96AQ9|F131C_HUMAN Protein FAM131C OS=Homo sapiens GN=FAM131C PE=2 SV=2  ali   20  66............................................................GYLSDSRSRPGNYNVAALATSS-----LVGVVQSIKDHITKPTAMAR--GRVAHLIE............................................................................................................ 115
4 -5.090sp|Q86XD5|F131B_HUMAN Protein FAM131B OS=Homo sapiens GN=FAM131B PE=1 SV=3  ali   16  11.........................................................DTTSILPKLKRNSNAYGIGALAKSS-----FSGISRSMKDHVTKPTAMGQ--GRVAHMIE............................................................................................................ 63
5 -4.790sp|Q6UXB0|F131A_HUMAN Protein FAM131A OS=Homo sapiens GN=FAM131A PE=2 SV=1  ali   17  26....................................................MDPNYCHPSTSLHLCSLAWSFTRLLHPPLS------PGISQVVKDHVTKPTAMAQ--GRVAHLIE............................................................................................................ 82
6 -4.460sp|Q8TE77|SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2  ali   2VQLLRPQDDIRLAAQLEAPRPPRLRYLLVVS--TREGEGLSQDETVLLGVDFPDSSSPSCTL-------GLVLPLWSDTQVYLDGDGGFSVTSGGQSRIFKPISIQTMWATLQVLHQACEAALGSGLVPGGSALT.......................................................................................... 127
7 -4.290sp|Q9Y2I7|FYV1_HUMAN 1-phosphatidylinositol-3-phosphate 5-kinase OS=Homo sapiens GN=PIKFYVE PE=1 SV=3  ali   10  14......KNDLTLGIFLERYCFRPSYQCPSMFCDTPMVHHIRRFVHGQGCVQIILKELHTILTYSWCRICKQVTPVVALS------NESWSMSFAK--YLELRFYGHQYTRRANAEPCGHSIHHDYHQYFS-----YNQMVASFSYSPIRL---EVCVPLPKIFIKRQAPLKVSLLQDLKDFFQKVSQVYVAIDERLASLK......................... 200
8 -4.210sp|Q76I76|SSH2_HUMAN Protein phosphatase Slingshot homolog 2 OS=Homo sapiens GN=SSH2 PE=1 SV=1  ali   4FILLRPEDNIRLAVRLESTYQNR-YMVVVSTNGRQDTEES------VLGMDFSSNDSSTCTM-------GLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWSALQSLHKACEVARAHNYYPGSLFLT.......................................................................................... 127
9 -4.200tr|E7ETP3|E7ETP3_HUMAN Uncharacterized protein OS=Homo sapiens GN=LHX3 PE=3 SV=1  ali   18  6...............................................LLSSLVYPD-TSLGLVPS--APGGPPPMRVLAGNGPSSDLSTGSSGGYPDFPASPAS......................................................................................................................... 60
10 -4.190tr|Q5TDC2|Q5TDC2_HUMAN Mitochondrial carrier homolog 1 (C. elegans) OS=Homo sapiens GN=MTCH1 PE=2 SV=1  ali   11  5.............NLLAHFINAYLVDDSVIQPGPGHPELYQVRDGDC--ADLPLPASWRPHGCEQLRAASWAPPLLILDSLLEVPECAACFSAGCHQDHALPWSNLN--------LKNTVSTWPPWVRPDHLGTPARRLQPNNNQMCSSPAGLQFHICHVSV--------------QMWG............................................. 155

FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 7 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.