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Query: gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588), from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CYSTPDGVMSSLSQAEKIMESRPDSAMAILQHIPTPETLHGKAQADYSLLMTQAMDKNYINFTSDSLIKFAVGYYGGHTEDLVAKGKSFYYYGRVMESLDKVEDAMTFYLKAKDVLQSSDQFKLLGLVTEKIGDLNRRQKLLDAALNDYKESFDFYASIPDSLCMLYAYRNLGRGFLYKNQIDSAYYYYDKALYILNLKKYSAVGSILLELGVIHRSEKDYVGAEQYFLSFIEKEKDPEKLFSGYLALGNLYLYMDRLKDAERYLLLCLGSSNLVIKRDACECLYDLEKELNNFKGAIGYKDIADSLRIITQDIDIQNSIATLQSRYNSEKWQRESLQSSIEKKNILLISSFVSFIAIMVIIYIYYKYRTNQKLVKDINERIRKNDADIKMYQRQILNYQDLQRETLQDYRNQIGELHGKMSVLEDQNKALSLRLTEKKHDIPESEADDLYAIYMQALHILIMLRGKNIENTSGKKLLLDADWDKLFHLSNAIHGDFITRIKNDFPTLTKHDIEICCLLRFGIEHEVLGSIFLTETDSVTKAKRRMKKRLNLSASDDLDVFLLKYLast
1 -28.200sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)  ali follow..  10  1.......................................................................LNYEDKLQEDRFLYSNIAFNLAADAAQSKCLDQALALWKELLTKGQAPRCLQQTAASLQILAALYQLVAKPMQALEVLLLLRIVSERLKDHSKAAGSSCHITQLLLTLGCPSYAQLHLEEAASSLKH............................................................................................................................................................................................................................................................................................................................................................................... 129
2 -16.200sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 596-735)  ali follow..  15..............................................................................................................................................KHELDVVAYVLRQGIVVGSSPLEARACFLAIRLLLSLGRHEEVLPFAERLQLLSG--HPPASEAVASVLSFLYDKKYLPHLAVASVQQH--GIQSAQGMSLPIWQVHLVLQNTTKL................................................................................................................................................................................................................................................................................................................... 126
3 -14.500sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2 (Range: 162-355)  ali follow..  10  1....................................................................................EVEAYLQLLVVIFNSKRYKEAQKISDDLMQKISTQNRRALAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYY-TGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVH--VELLLGEIPDRLQFRQPSLK....................................................................................................................................................................................................................................................................................................... 193
4 -10.600sp|Q12772|SRBP2_HUMAN Sterol regulatory element-binding protein 2 OS=Homo sapiens GN=SREBF2 PE=1 SV=2 (Range: 522-814)  ali follow..  42..........................................................................VIRPHSRSSVTFWRHRKQADLDLARGDFAAAAGNLQTCLAVLEAKTSARDAALAYHRLHQLHITGKLPASDVHMALCAVNLAECAEEPSTLVEIHLTAAMGLKTR-----ASYFLSRAQSLCGPEHSASLRWLCHPLGQKFFMERSWSVKSAAKESLYCAQRNPAD----IAQVHQAFCK--------NLLERAIES...................................................................................................................................................................................................................................................................................................... 293
5 -9.530sp|Q9NX78|CN101_HUMAN UPF0679 protein C14orf101 OS=Homo sapiens GN=C14orf101 PE=1 SV=3 (Range: 377-707)  ali follow..  10  224...........................................................................................................................IFNLAETAHMPSKVKAQLYAQAYDLYKEIVYL-----QKEHPVNWHKNYAIACERMLRLQARDADPEVLLSETIRH------RLYSQKAPNDPQQADILGALKHLRKELQSLRNRKNV.................................................................................................................................................................................................................................................................................................................................... 331
6 -6.980sp|Q12769|NU160_HUMAN Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3 (Range: 959-1146)  ali follow..  5........................................................................................................................................................................YDKVLRLLDVIGLPELVIQLATSAITEAG-DDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCEVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTMFEYGMRLGREVRTLRGLEKQGNC.................................................................................................................................................................................................................................................. 166
7 -6.780sp|Q6ZTY8|CL063_HUMAN Putative uncharacterized protein C12orf63 OS=Homo sapiens GN=C12orf63 PE=2 SV=2 (Range: 245-570)  ali follow..  12  76......................................................................................................KLLSLFLAQTQDVLQASNQRSLKVQALHSLGSLLIFAEKKRAAFKCWCQALDDIFRKPDVLH-AVISAKIAQ-FIKSLNVEKKTDCCILSALLFQGLLRTTLPHPKAERCYAQYEITQLLPGIELFSDRYRA--DICSVIASLYYIIRELHFVRQNLIVLQYFVSGI-CQDITRNLEARILKIEVLIDLRFFSEAFYEISQ...................................................................................................................................................................................................................................................................... 317
8 -6.390sp|Q969F9|HPS3_HUMAN Hermansky-Pudlak syndrome 3 protein OS=Homo sapiens GN=HPS3 PE=1 SV=1 (Range: 485-1004)  ali follow..  16.......YKEMVDYSNTYKTVKTQSCIHLLSE-------------AHLLVRAALMDASQLEPGEKAELLEAFK-------------ESCGHLGDCYLDSQHSHLTLPYYKMSTDWTVEDGLQKYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNI----NPLTAMSYLRKLDTSGFSSILVTLT-----KAAVALKMGDLDMHRNEMKSH-----SEMKLVCGFILEPRLLIQQRKGQIVPTELALHLKETQPGLLVASVLGL--QKNNKIGIEEADSFFKVLCAKDEDTIPQLLVDFWEAQLVACLPDVVLQE-----------------LFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPWVHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTRLKEYEQCIDIL-PYANHELKEENRTLWWKKLLPELCQRIKCYLSSLKETLSIVAVE-----------LELKDFMNVL--------------------PEDGTATFFL... 507
9 -6.250sp|Q5SR76|CJ093_HUMAN TPR repeat-containing protein C10orf93 OS=Homo sapiens GN=C10orf93 PE=2 SV=2 (Range: 1105-1248)  ali follow..  11  1.......................................................................................................................DDLALRAALYGLLFHSHADQDDWEGGLKVLDEAVQVLPRTAHRLLIVIVKAKLGQ--------------FSMEIQKFKAESEDYLARMWHRLALNSPSVSGELACYNNAIQALQKPEMEWQKVEYLMEFGQLHHRHFPLEDVVFHLRWAVEI...................................................................................................................................................................................................................................................................................................... 144
10 -5.710sp|Q6PIJ6|FBX38_HUMAN F-box only protein 38 OS=Homo sapiens GN=FBXO38 PE=1 SV=3 (Range: 913-1188)  ali follow..  10  2..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DDHVQVLVLKSKNLVGVTMTNCGITDLKMMFIHATRCRVLKHLKVENAP-IV-NRFDYAQCKKLNMD.... 72

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.