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Query: gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415), from B.fragilis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAESKNNKKRCSFCGRSENEVGFLITGMNGYICDSCATQAYEITQEAMGAGKQSAGATRLNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDKAVEYKLGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLDYAKHQLEKANLARLQTALast
1 -7.490sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)  ali follow..  21...............................LGELVFKDWSVVIEKLHPATLMIENIDYKHSFERFYHEEFTEKCKQMCVISKESDRTFEIL-------------EKFALKDVELDFNNVAADSSLDSVPRFFRI........................................................................................................................................................................................................................................................................................ 111
2 -7.440sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)  ali follow..  15  13.............................................................................YFSSENYSSDFVKRDSYEKLKDLIHCWAESPKPIFAKIINLYHHPGCGGTTLAMHVLWDLKKNF---RCAVLKNKTTDFAEIAEQVINLVTYRAKSHQDYIPVLLLVDDVYFLQNAIHSVLAEKDLRYEKTLVIILNCMRSRNPD................................................................................................................................................................................................. 160
3 -5.060tr|B7Z676|B7Z676_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC9B2 PE=2 SV=1 (Range: 71-175)  ali follow..  16..........................................................................................................................................................................................................................................................................................................RVITNGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLP............................. 103
4 -4.930sp|Q96C12|ARMC5_HUMAN Armadillo repeat-containing protein 5 OS=Homo sapiens GN=ARMC5 PE=2 SV=2 (Range: 628-727)  ali follow..  11  1..................................................................................................................NLTVQAESPFGVGALTHLLLSALTLPFICRKPSLWRRL-LLEQGGLRLLLAALTRPAPHPLFLFFAADSL....................................................................................................................................................................................................................................... 78
5 -4.630sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens GN=RNF213 PE=1 SV=2 (Range: 1-330)  ali follow..  12......................................................................LPSAFSQHKVFVTPPLEAIQAYLAGHYRVPKQTLSAAAVFNDRLCVGIVASAGVGKSLYVKRLHDKMKMQLNVKNVPLKIRLIDPQVDESRVLGALLPFLD-AQYQKVPVLFHLD----------TSSVQTGIWVFLFKLLILQYLMDINGKMWLRNPCHLLERRTSVPSRSSSALRTRVPQFSFLDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWEFCSETFQRPYQYLRRFNQNQDLDEGTPEECLQHFLFVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFK--KFVVTFMIF.................................... 330
6 -4.390tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1 (Range: 1-102)  ali follow..  22  41...............................................................................VGATPHLRNLAVAMCSRYD-----------SIPVSTSLLGDTSDTTSTGLAQRLGLGGKTGLACE............................................................................................................................................................................................................................................................................... 94
7 -4.360sp|Q7Z745|HTRB2_HUMAN HEAT repeat-containing protein 7B2 OS=Homo sapiens GN=HEATR7B2 PE=2 SV=3 (Range: 431-878)  ali follow..  11  125.....................................................................ELLQPLEGKNISTVLWETMLLQLLKESLWKISDVAWTIQLTQDFKQQMSYSNNSTEKKFLWKALGTTLDSDFVNSQIKEFLTAPNQLGDQRQGITSILGYC-----AENHLDIVLKVLKTFQNQEKFFMNRCKVALHAPKKQLLSRLNQDIISQVLSLHGQCSQVLGMSVMNKDMDLQMS-FTRSITEIGIAVQDAEDQGFQFSYKEMLIGYMLDFIRDEPLDSLASPIRWKALIAIRYLSKLKPLSLQDHLNILEENIRRLLPLPPLENLKSEGQTDKDKEHIQFLYERSMD------ALGKLLKTMM..................................... 447
8 -4.280sp|Q9NUK0|MBNL3_HUMAN Muscleblind-like protein 3 OS=Homo sapiens GN=MBNL3 PE=2 SV=2 (Range: 271-354)  ali follow..  14  6.................................................................................PNGATPVFNPTVFHCQQALTNLQLPQPAFIPAGPILCMAPAGATPTTVSAATTPATSVPFAAPTTGNQLK........................................................................................................................................................................................................................................................................ 83
9 -4.220sp|Q96LM5|CD045_HUMAN Uncharacterized protein C4orf45 OS=Homo sapiens GN=C4orf45 PE=2 SV=3 (Range: 1-146)  ali follow..  16  16.................................................................................................................KQMIFTGPDYIKDYLPK------------IHQHTSYVGEQHLALEKTGDLRYLWRPASNRSLPAKYKHEYVSEIGWRIPQYNFINKSRLGSGFHIKYEELS......................................................................................................................................................................................................... 104
10 -4.070sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2 (Range: 556-656)  ali follow..  15  10..................................................................................DIKVEQLLASSLLQLDHGRLRLYHDSTNIDKVNLFILGKDGLAQELANEIRTQSTDDEYALDGKIYELDLRPVDAKSPYFLSQLWTAA..................................................................................................................................................................................................................................................... 97

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.