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Query: gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117), from B.fragilis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MADVKEKINLLDVIPFRSENITAEKGSDGTVTIAFPRFKYEWMRRFLLPKGMSADIHVRLEDHGTAVWELIDGKRTVRRIIEELAEHFNYEENYESRITAYITQLQKDGFVKLVIENLast
1 -30.0005sxy_A mol:protein length:94 Bifunctional coenzyme PQQ synthesis protein C/D  ali model follow..  17  1....................MEPTAFSGSDVPRLPRGVRLRFDEVRNKHVLLAPERTFDLDDNAVAVLKLVDGRNTVSQIAQILGQTYDADPAIEADILPMLAGLAQKRVLE..... 93
2 -29.3003g2b_A mol:protein length:95 Coenzyme PQQ synthesis protein D  ali model follow..  17  5.......................STISRDSCPALRAGVRLQHDRARDQWVLLAPERVVELDDIALVVAQRYDGTQSLAQIAQTLAAEFDADASIETDVIELTTTLHQKRLLRL.... 95
3 -27.2005v1u_A mol:protein length:91 TbiB1  ali model follow..  1............................SNAMKISDAVVSAHIDDEVVLLHLQTGTYFGLDAVGSRIWSLLEEGKRPEEIVDAICAEYSVDRPVERDLRDFLRALANKELLEGYADE 90
4 -24.3005vrd_D mol:protein length:392 Bifunctional coenzyme PQQ synthesis protein C/D  ali model follow..  18  298.........................FSGSDVPRLPRGVRLRFDEVRNKHVLLAPERTFDLDDNAVAVLKLVDGRNTVSQIAQILGQTYDADPAIEADILPMLAGLAQKRVLE..... 385
5 -9.6802k4b_A mol:protein length:99 Transcriptional regulator  ali model follow..  16  33.............................................................IVMRVIWSL--GEARVDEIYAQIPQELE----SLATVKTLLGRLVKKEMLSTEKE. 82
6 -8.4404bs9_A mol:protein length:781 TRUD  ali model follow..  17  3............................PTALQIKPHFHVEIIEPKQVYLLGEQGNHALTGQLYCQILPFLNGEYTREQIVEKLDGQVPEEY-----IDFVLSRLVEKGYLTEVAPE 86
7 -8.1703dee_A mol:protein length:249 Putative regulatory protein  ali model follow..  170.......................................................MYQTLDGFDMMLLEIMSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRII...... 226
8 -8.1504v1t_A mol:protein length:775 LYND  ali model follow..  16  1.........................MQSTPLLQIQPHFHVEVIEPKQVYLLGEQANHALTGQLYCQILPLLNGQYTLEQIVEKLDGEVPPEY-----IDYVLERLAEKGYLTEAAPE 87
9 -7.8701p6r_A mol:protein length:82 Penicillinase repressor  ali model follow..  18  13.............................................................EVMKVIWKH--SSINTNEVIKELSKTSTWSPKT---IQTMLLRLIKKGALNHHKE. 62
10 -7.5404esj_A mol:protein length:257 Type-2 restriction enzyme DpnI  ali model follow..  13  199...........................................................IDKIEGSEFTLED----MYRFESDLKNIFVKNNHIKEKIRQQLQILRDKEIIEFKGR. 251

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.