current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310
# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -76.0004m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti-sigma factor  ali model follow..  28  10........................................................................................KQHTSASDHLLTEISVNHGEHKQVTLPDGTVVHLNAGTVMRYPTEFTSDIRLVEMEGEAFFNVMRDEGKPFIVRTRQADVKVLGGSFNVKAYQEDELMAVSVRTGKVEVD---MPESVMRLLPNEQIIVNNGEILKKNEDAQKVTAWLQGGLYFNRTPISSVIHDLERMYNQEIVLDPNVVFDDYIYGEH-DNKSLEAVLNAIQYSTGIRYRKEESRIVLYKT 230
2 -7.6404ld1_A mol:protein length:184 Uncharacterized protein  ali model follow..  11  28....................................................................................................KELSADGQTVKVMFFNGDVKHTMPDQRVIYYYAEAQTTHITYPDGMEVLQFPNNQTE---KHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDTGQREIHTADFKRREYPDGTVKTVYSDGRQETQYPTGRVRLKDPQGKVIMD........................................................... 184
3 -7.6204bxp_A mol:protein length:192 CPAP  ali model follow..  12  5...................................................................................................EEIMQSDS-KIEKMLPDGGRLVVFPNGTRKELSADGQTVKVMFFNGDVKHTMPDQRVI--YYYAEAQTTHITYPDGMEVLQFPNNQTEKHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDGSKVIQFNTGQREIHTADFKRREYP-----TVKTVYSDGRQETQYPTGRVR................................ 178
4 -7.3902z2s_B mol:protein length:203 Anti-Sigma factor ChrR, transcriptional activator ChrR  ali model follow..  8.SDALLTAYAAGTLSEAFSLVVATHLSLCDECRARAGALDAVGGSLMEETAPVALSEGSLA-QRPAPARRADPRAPAPLADYVGRRLEDVRWRTLGGGVRQAILPTGGEAIARL-------LWIPGGQAVPDGHRGLELTLVLQGAFRDETDRFGAGDIEIADQ-------ELEHTPVAERGLDCICLAATDAPLRFN................................................................................................................. 200
5 -7.2905gzf_A mol:protein length:189 Galectin-8  ali model follow..  18  34..............................................................................................TLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVTLINEKWGREEITYDTPFMVLKDKFQVAVNGKHTLLYGHRGPEKIDTLGIYGKVNIHSIGFSFSSDLQST.................................................................................................... 163
6 -7.0004by2_A mol:protein length:252 ANASTRAL SPINDLE 2, SAS 4  ali model follow..  11  96....................................................................................................RMLYFNKDIKETNIREGTVKYYYAETNTWHTSYLDGLEILEFPNGQTEHRRKDGTVEIHFPNNSIKIVDPSDTEKLEEWRYADGTHLVQLRNGDKILNLP-NGQKEIHTKLNKRREYPDGTVKLVYPDGSQETRYSNGRVRLKDKDGKLIMDTDYAKY..................................................... 252
7 -6.5202v9u_A mol:protein length:132 MSPA  ali model follow..  10  3..........................................................................................................DNELSLVDGQDRTLTVQQWDT---PLDRNRLTREWFHSGRAKYIVAGPGADEF-----EGTLELIGGPGIQEVATFSVDVSGAEGGVAVSNGVLLRPFARLIASTGDSVTTYGEPWNMN...................................................................................... 132
8 -6.5204cp0_A mol:protein length:290 EPITHELIAL ADHESIN 9  ali model follow..  16  136..........................................................................................................................RLPTAYNYPAKITFSNFTMVLSG--YFKPKSTGLYKFEIHADDFILFNFGSKYAMWPNEADQELEVYLFEDSIRLFYNNRDYHSKFYPPNTEEITYDFDGYLYMLDDTGN............................................................................... 270
9 -6.4602yv8_A mol:protein length:164 Galectin-8 variant  ali model follow..  20  38..............................................................................................TLIVICGHVPSDADRFQVDLQNGSSVKPRADVAFHFNPRFKRAGCIVTLINEKWGREEITYDTPFMVLKDKFQVAVNGKHTLLYGHRGPEKIDTLGIYGKVNIHS................................................................................................................ 155
10 -6.3202dyc_A mol:protein length:158 Galectin-4  ali model follow..  17  30..............................................................................................MSVYIQGMAKENMRRFHVNFAVGQD---GADVAFHFNPRFDGWDKVVTMQSGQWGKEEKKKSMPFMVMPEHYKVVVNGNSFYEYGHRPVQMVTHLQVDGDLELQSINFLGGQPAAAP.................................................................................................... 157

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 0 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486.