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Query: gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157), from B.fragilis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKEQFKSIVHPVMKANSFRRKGNSWYKTTAECIVVFNLQHSLYGKMFYINLAALLRKGDDLLFPKEYQCDIRMRFPIMEIEGYSTQMILDLESTIDEQLRSRLIENIINISIPILQKLESIDGIIELYGEKPELNNIYPFSSILYRKEMNNKLKAILast
1 -8.3402xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X  ali model follow..  3ITSDEVNFLVYRYLQESGFSHSAFTFGIESH.............................................................................................................................. 33
2 -7.7901usu_B mol:protein length:170 AHA1  ali model follow..  29......KEYFKQKIVGVEAGSVKDKKYAKIKSVSSIVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKETSELSEAKPLIRSELLPKLRQ--IFQQFGKDLLAT......................... 157
3 -7.4801fzr_A mol:protein length:138 ENDONUCLEASE I  ali model follow..  5..RSGLEDKVSKQLESKGIK-----FEYEEWKVPYVIPASNHTYTPDFLLPNGIFVKTKGLWESDDRKK---HLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKE.......................... 125
4 -6.5602pfj_A mol:protein length:149 Endodeoxyribonuclease 1  ali model follow..  16..RSGLEDKVSKQLESKGIK-----FEYEEWKVPYVIPASNHTYTPDFLLPNGIFVETAGLWESDDRKK---HLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKE.......................... 136
5 -6.4405nqs_A mol:protein length:210 Protein TOPLESS  ali model follow..  23SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNW............................................................................................................. 70
6 -6.1704v4k_k mol:protein length:166 PACKAGED DNA STABILIZATION PROTEIN GP4  ali model follow..  1MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVD....................................................................................................................... 38
7 -6.1604zhe_A mol:protein length:209 ASPR2 protein  ali model follow..  3SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEW............................................................................................................. 50
8 -6.1502r5x_A mol:protein length:129 Uncharacterized conserved protein  ali model follow..  13  18.......SRLDDIMERLGFVRAAQWDYERV-----TYDRKYVVKEGTYYLRVQGYAIE----GNVDSRYALIKLLTPIMGKHYYPHGVEYGDDEHFPSSLVSQCQNVLAQ............................................... 111
9 -6.1005jgc_A mol:protein length:209 Protein TPR1  ali model follow..  3SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEW............................................................................................................. 50
10 -5.8503x38_A mol:protein length:89 Mitochondrial morphogenesis protein SLD7  ali model follow..  8.FNETLSKLILGGLRLRGISNSITDYQKLYKITFDAAEF...................................................................................................................... 45

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.