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Query: gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361), from B.fragilis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPEKTAPVLAITPNEQIFLPKCYHRIQDICAVIYDQLTEIYKEKNYQDLYHTESILDGSETGMDELNKNKIHAIDWLTWNNKNKDLELILTKHIILSITSDFINFVFESLYCAKRGKITVAYALIRKPFTDELLILEQLLYNRSDFIYRFFHSDTVETYDPSSKNINKVDVIKNAVDCLTNPLFDADFVHDLRYNKLCEYGINGISNHALHIVTKNKNYRTEPQNFNFVFSQEEDFALYYKQYYWVVPYILIYAVDIIDKLIFSILKDTDNQNLSIVKRLRRTIGFSLFTESYLRTKKDSIFILFNKKIRFTCPICKNKYFLKRDDYEFFFETEAILCPKCNNDNLTIENIQKIKNIIGLLast
1 -9.3502co8_A mol:protein length:82 NEDD9 interacting protein with calponin homology and LIM domains  ali model follow..  15  17........................................................................................................................................................................................................................................................................................................................LCALCGEHLYVLERLCVHFFHRSCFRCHTCEATLWPGGY.......... 57
2 -8.9601iml_A mol:protein length:76 CYSTEINE RICH INTESTINAL PROTEIN  ali model follow..  14  2........................................................................................................................................................................................................................................................................................................................KCPKCDKEVYFAERVTSKDWHRPCLKCEKCGKTLTSGGHAEH....... 45
3 -8.8205xog_L mol:protein length:72 RNA polymerase subunit ABC10-alpha  ali model follow..  13  10..................................................................................................................................................................................................................................................................................................SGTDLAAAASGVAPNKHYGVKYTCGACAHNFSLNKSD--------PVRCKECGHRVIYKARTKRMIQF... 69
4 -8.7701x63_A mol:protein length:82 Skeletal muscle LIM-protein 1  ali model follow..  14  10.................................................................................................................................................................................................................................................................................................................TTREDSPKCKGCFKAIVAGDQNVETVWHKDCFTCSNCKQVIGTGSFFPK....... 61
5 -8.7502ctd_A mol:protein length:96 Zinc finger protein 512  ali model follow..  11  19.......................................................................................................................................................................................................................................................................................................GSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKENCKQEMFTCHHCGKQLRSLAGMKY....... 80
6 -8.7401wyh_A mol:protein length:72 Skeletal muscle LIM-protein 2  ali model follow..  12  1..................................................................................................................................................................................................................................................................................................................GSSGSSGCSACGETVMPGSRKLEQTWHEHCFLCSGCEQPLGSRSFVPD....... 51
7 -8.7402gqj_A mol:protein length:98 Zinc finger protein KIAA1196  ali model follow..  12  5...................................................................................................................................................................................................................................................................................................SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEQDALKCQHCRKQFKSKAGLNY....... 72
8 -8.7101cxx_A mol:protein length:113 CYSTEINE AND GLYCINE-RICH PROTEIN CRP2  ali model follow..  14  38........................................................................................................................................................................................................................................................................................................................KCSACGDSVYAAEKVIGKPWHKNCFRCAKCGKSLESTTLTEK....... 81
9 -8.6302ehe_A mol:protein length:82 Four and a half LIM domains 3  ali model follow..  12  10.................................................................................................................................................................................................................................................................................................................YDNTFANTCAECQQLIGHDSRELFRHFHEGCFRCCRCQRSLADEPFTCQ....... 61
10 -8.6202csz_A mol:protein length:76 Synaptotagmin-like protein 4  ali model follow..  12  5..................................................................................................................................................................................................................................................................................................SSGLLEIKRKGAKRGSQHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVGPSSG. 76

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24