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Query: gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207), from B.fragilis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIILKQDDSCQVAQTTCTTNSLEIRYKDYSVLKKTLDLNTKSINSNSCIELIIYGTHGNEKEICKLTKPDIKDLSYFFKGKVCRLVLDACHSACHIPHFKEMLTDDGIILCHVGICQVNSIETKTGKDTYERWINGNKEGLKVWSDGIVPAIYTRKNNTLTYYECSKFEVDINHPFTGTEFKTYCLNLKSKGIKMVIKNHSDFDKILast
1 -7.2103u9l_A mol:protein length:324 3-oxoacyl-[acyl-carrier-protein] reductase  ali model follow..  13  1......................MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGEDGVLIHNAGHMVFGPAEAFT-PEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIPYFAAKAAMD----------VQYARELSRWGIETSIIVPGAF... 193
2 -6.8103l60_A mol:protein length:250 BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE  ali model follow..  12  117LVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVHRVVDGAQVAQFMCELRDLIESPETALLDL............................................................................................. 242
3 -6.7905u2p_A mol:protein length:428 Sugar ABC transporter substrate-binding protein  ali model follow..  13  13.........GHGSKEKGKEEEPVRLSVHYSSGLQNVFTKLELEEGIAVTVETIQDDQYPTVLHA-RLADGTAPDVVEVSLPSLHALFVDLSKEAWIPDLLIPPTDPYGKTF--------------------------------------LPLNCAVSINALFYNKDLFDRYGISEPKSWNELLESCALIVKSGISIV.......... 172
4 -6.6903oo6_A mol:protein length:415 ABC transporter binding protein AcbH  ali model follow..  13  13......SHMSVSDGNGPITFGSNYSDEAPKAAFASLMQQATT--STTVPVTVNTTDHNTFQNNISNYLQGTPDSLATWFAGYRLQ------------------FAAQGLL-----------TPIDDVWDKIGGTFNDAAKSLSKGLDGHYYLVPLYNYPWVVFYNKSVFSKGYEVPASWEAFIALARKMQSDGLVPLAFADKD.... 180
5 -6.5401c4t_A mol:protein length:233 PROTEIN (DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE)  ali model follow..  19  108VTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEHRLIDGRESVGFLVTIKELLEDPTRLLLDV............................................................................................. 233
6 -6.5204g68_A mol:protein length:456 ABC transporter  ali model follow..  15  29............SSKKMCSSNN--------SKSNTSNSSKTSSSSKKITLTFWNLFTGEPAKTKVK-ENPNVQIVESVTENDAYKTKIKAAIAANEAPDI--QTWAGGFSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTY--NGKIYGIPFDQQASVLYINKELFKYNVKVPTTFSELIDAIKTFKSKGVTPFALGEKD.... 217
7 -6.3702b3b_A mol:protein length:400 glucose-binding protein  ali model follow..  15  1...............................................MKLEIFSWWAGDEGPALEALIRPGVEATVTGGAGVNARAVLKTRMLGGDPPDTFQVHAGMELIGTWVVANRMEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVPVNIHRSNVMWYLPAKLGWGVNPPRTWDKFLATCQTLKQKGLEAPLALGENW... 167
8 -6.3103mae_A mol:protein length:256 2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acetyltransferase  ali model follow..  10  122YVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAHRILDGLLAGKFLQAIKANVEKISKENTALYEG.......................................................................................... 250
9 -6.2604g68_B mol:protein length:432 ABC transporter  ali model follow..  15  5............DDDKMCSSNN--------SKSNTSNSSKTSSSSKKITLTFWNLFTGEPAKTKVK-ENPNVQIVESVTENDAYKTKIKAAIAANEAPDI--QTWAGGFSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTY--NGKIYGIPFDQQASVLYINKELFKYNVKVPTTFSELIDAIKTFKSKGVTPFALGEKD.... 193
10 -6.2204ief_A mol:protein length:210 Gingipain R2 Pro-Domain  ali model follow..  11.....GRNPQVRLLSAEQSMSKVQFRMDNLQFTGVQTSKGVQVPTFTEGVNISEKGTPILPILSRSLAVSETRAMKV----EVVSSKFIEKKDVLIAPSKGVISRAENPDQIPYVYGQSYNEDKFFPGEIATLSDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISLVKNSTFEDIYKSVFMNYEA.... 208

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.