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Query: gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415), from B.fragilis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAESKNNKKRCSFCGRSENEVGFLITGMNGYICDSCATQAYEITQEAMGAGKQSAGATRLNLKELPKPVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDKAVEYKLGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLDYAKHQLEKANLARLQTALast
1 -97.1001um8_A mol:protein length:376 ATP-dependent Clp protease ATP-binding subunit clpX  ali model follow..  51  2.........................................................EEFLLSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQE-KMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIAKTHSK 373
2 -94.6003hte_A mol:protein length:363 ATP-dependent Clp protease ATP-binding subunit clpX  ali model follow..  54  1..............................................................SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGTVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSEDVEKVVIDESVIDGQSKPLLIYGKPEA 357
3 -76.8001ofh_A mol:protein length:310 ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU  ali model follow..  38  2...............................................................SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQL-QEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVENGIVFIDEIDKICK--KGEYSGADVSREGVQRDLLPLVEGSTVST-----------KHGMVKTDHILFIASGAF--------------------------------------QVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENED... 304
4 -75.6001e94_E mol:protein length:449 HEAT SHOCK PROTEIN HSLU  ali model follow..  26  4..................................................................TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADED... 436
5 -71.5001g3i_A mol:protein length:444 ATP-DEPENDENT HSLU PROTEASE ATP-BINDING SUBUNIT HSLU  ali model follow..  26  2...............................................................SEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENED... 438
6 -53.9004lj4_A mol:protein length:339 Chaperone protein ClpB  ali model follow..  17  4.....................................MEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLK------DPNRPIGSFLFLGPTGVGKTELAKTLAATL-----FDTEEAMIRIDMTEYMEKHAVSRL-----------------IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD-----------EVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEI----QLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQLAGEVKEGDRVQVDVGPAGLVFAVPARVEA. 339
7 -49.7004fcv_A mol:protein length:311 Chaperone protein ClpB  ali model follow..  18  2.............................................................LGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLK------DPNRPIGSFLFLGPTGVGKTELAKTLAATL-----FDTEEAMIRIDMTEYMEKHAVSRL-----------------IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRD-----------EVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEI----QMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQLAGEVKEGDRVQVDVGPAGLVFAVPAR.... 310
8 -41.6006azy_A mol:protein length:885 Heat shock protein Hsp104  ali model follow..  13  533.....................................EVVGPDQIMEVVSRWTGIPVSNLQRSEKEKLLHMEEYMKQHVVGQDEAIKAICDAIRLSRTGLQ------NRNRPLASFLFLGPTGCGKTLCVKELAAFL-----FNDPGAIVRIDMSEYMEKHAVSRL-----------------VGAPPGYIGHDEGGQLTEAVRRRPYTVVLFDEMEKAHKDVSNLLLQILDDGHCTDSKGRRVDFKNTIIVMTSNLGADLFELDEGDKVSQATKN------------AVLATARRHFANEFINMIDELIVFNRLTPSNIRKIVDVR----LKEVQERLDEKQITLDVDDKAKDLLAQQGFDPVYGARPLNRLIQHALLTQLSRLDGGVRPGEIAKVTVDQEGEIIVIRNHGIES 868
9 -40.0003j3r_A mol:protein length:810 Negative regulator of genetic competence ClpC/MecB  ali model follow..  17  469.....................................SEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLK------DPKRPIGSFIFLGPTGVGKTELARALAESI-----FGDEESMIRIDMSEYMEKHSTSRL-----------------VGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKD----MKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSL----MSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSELRGNIHKGQHIVLDVEDGEFVVKTTAKTN.. 810
10 -40.0001ksf_X mol:protein length:758 ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA  ali model follow..  13  396..............DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLG------HEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--------IELLRFDMSEYMERHTVSRL-----------------IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET------------ERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANLFGSLVDGGQVTVALDKEKNELTYGFQSAQK 751
11 -39.8006em8_A mol:protein length:818 ATP-dependent Clp protease ATP-binding subunit ClpC  ali model follow..  16  470......................................SLSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLK------DPKRPIGSFIFLGPTGVGKTELARALAESM-----FGDDDAMIRVDMSEFMEKHAVSRL-----------------VGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYET----IRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTM----MVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELDGNQIEGKKVTVDHDGKEFKYDIAEQTSET 812
12 -39.5004ciu_A mol:protein length:727 CHAPERONE PROTEIN CLPB  ali model follow..  14  387.....................................NKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGL------ADPNRPIGSFLFLGPTGVGKTELCKALANFM-----FDSDEAMVRIDMSEFMEKHSVSRL-----------------VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDAVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFG------------ELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQ----LKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQLSGELVPGKVIRLEVNEDRIVAVQHSMARS. 721
13 -39.2001qvr_A mol:protein length:854 ClpB protein  ali model follow..  17  519.....................................LEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLK------DPNRPIGSFLFLGPTGVGKTELAKTLAATL-----FDTEEAMIRIDMTEYMEKHAVSRL-----------------IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD-----------EVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ----LSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQLAGEVKEGDRVQVDVGPAGLVFAVPARVEA. 854
14 -39.1005ofo_C mol:protein length:871 Chaperone protein ClpB,ATP-dependent Clp protease ATP-binding subunit ClpA,Chaperone protein ClpB  ali model follow..  15  533.....................................NKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGL------ADPNRPIGSFLFLGPTGVGKTELCKALANFM-----FDSDEAMVRIDMSEFMEKHSVSRL-----------------VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDAVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGVRETERKS------------IGLIHQDNSTDAMEEIKKIFRPEFINRIDEVVVFHPLGEQHIASIAQIQ----LKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQLSGELVPGKVIRLEVNEDRIVAVQGSRS... 865
15 -38.6005vjh_A mol:protein length:908 Heat shock protein 104  ali model follow..  15  539.....................................NVVDSDTISETAARLTGIPVKKLSESENEKLIHMERDLSSEVVGQMDAIKAVSNAVRLSRSGLANPRQ-------PASFLFLGLSGSGKTELAKKVAGFL-----FNDEDMMIRVDCSELSEKYAVSKL-----------------LGTTAGYVGYDEGGFLTNQLQYKPYSVLLFDEVEKAHPDVLTVMLQMLDDGRITSGQGKTIDCSNCIVIMTSNLGAEFINSQQGSKIQESTKN------------LVMGAVRQHFRPEFLNRISSIVIFNKLSRKAIHKIVDIRLKEIEERFEQ--NDKHYKLNLTQEAKDFLAKYGYSDDMGARPLNRLIQNEILNKLALLKNEIKDKETVNVVLKKGKSRDENVPEEAEE 875
16 -37.1003pxi_A mol:protein length:758 Negative regulator of genetic competence ClpC/MecB  ali model follow..  17  452.....................................SEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLK------DPKRPIGSFIFLGPTGVGKTELARALAESI-----FGDEESMIRIDMSEYMEKHST-------------------------------SGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKD-------------------------KVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSL----MSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSELRGNIHKGQHIVLDVEDGEFVVKTTAKTN.. 758
17 -36.7006e10_1 mol:protein length:932 Heat shock protein 101  ali model follow..  16  561....................................VDAVYQEHVSYIYLRDSGMPLGSLSFESSKGALKLYNSLSKSIIGNEDIIKSLSDAVVKAATGM------KDPEKPIGTFLFLGPTGVGKTELAKTLAIEL-----FNSKDNLIRVNMSEFTEAHSVSKI-----------------TGSPPGYVGFSDSGQLTEAVREKPHSVVLFDELEKAHADVFKVLLQILGDGYINDNHRRNIDFSNTIIIMTSNLGAELFKKKLFFDADNSGTPEYKRVMEDVRLSLIKKCKKV-FKPEFVNRIDKIGVFEPLNKKNLHKIVALR----FKKLEKRLEEKNIQVSVSEKAIDYIIDQSYDPELGARPTLIFIESVIMTKFAILKKELVDDMDVFVDYNSKAKNLVINLSKTPR 908
18 -36.6006dju_A mol:protein length:848 Chaperone protein ClpB  ali model follow..  16  531.....................................EEVGPDDIADVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVIGQKAAVTAVSDAVRRSRAGV------SDPNRPTGAFMFLGPTGVGKTELAKALADFL-----FDDERAMVRIDMSEYGEKHTVARL-----------------IGAPPGYVGYEAGGQLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGSGGSAE------------------------QVLAAVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQ----LAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKLAGQVHDGDTVPVNVSPDADSLIL....... 847
19 -36.5004d2q_A mol:protein length:858 CLPB  ali model follow..  15  529.....................................NKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGL------ADPNRPIGSFLFLGPTGVGKTELCKALANFM-----FDSDEAMVRIDMSEFMEKHSVSRL-----------------VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE------------RFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQ----LKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQLSGELVPGKVIRLEVNEDRI........... 853
20 -32.5005d4w_A mol:protein length:926 Putative heat shock protein  ali model follow..  14  559.....................................DVVGPDQINEIVARWTGIPVTRLKTSEKEKLLHMEQALSKIVVGQKEAVQSVSNAIRLQRSGLSNPNQ-------PPSFLFCGPSGTGKTLLTKALAEFL-----FDDPKSMIRFDMSEYQERHSLSRM-----------------IGAPPGYVGHDAGGQLTEALRRRPFSILLFDAVEKAAKEVLTVLLQLMDDGRITDGQGRVVDAKNCIVVMTSNLGAEYLSRANNGKDGKIDPTTRE---------LVMNTLRNYFLPEFLNRISSVVIFNRLTRREIRKIVDLRIAEIQKRLTD--NDRNVIIKVSEEAKDKLGAQGYSPVYGARPLQRLLEKEVLNRLAILRGQIREGEVAHVELVDGKVQVLPNHPDSEP 898
21 -29.1005j1s_A mol:protein length:284 Torsin-1A  ali model follow..  13  3............................................................GQKRSLSREALQKDLDDNLFGQHLAKKIILNAVFGFINNPKPKKPLT--------LSLHGWTGTGKNFVSKIIAENI---YEGGLNSDYVH-------------------------LFVATLHFPHASNITLYKDQLWIRGNVSACARSIFIFDQMDKMHAGLIDAIKPFLDYYDLVDVSYQKAMFIFLSNAGA--ERITDVALDFWRSGKQREDIKLKDIEHALSVSVFNNKNSGFWHSSLIDRIDYFVPFLPLEYKHLKMCIRVE----MQSRGYEIDEDIVS-RVAEEMTFFPKEERVFSDKGCKTVFTKLDYYYDD................................... 284
22 -24.1001in4_A mol:protein length:334 HOLLIDAY JUNCTION DNA HELICASE RUVB  ali model follow..  20  20..................................................................RPKSLDE-----FIGQENVKKKLSLALEAAKMR----------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL--------------ERGDVLFIDEIHRL--------------NKAVEELLYSAIEDFQIDI---MIGKGPSAKSIRIDIQPFTLVGATTRSGL------------------------------------------LSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-------------DVEIEDAAAEMIAKRS---RGTPRIAIRLTKRVRD.................................... 228
23 -23.4006blb_A mol:protein length:355 Holliday junction ATP-dependent DNA helicase RuvB  ali model follow..  16  2........................................NAMIEPDRLISAVSGRERDEQLDRAIRPLKLAD-----YIGQPSVREQMELFIHAARGR----------QEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNL--------------EAGDVLFVDEIHRL--------------SPIVEEVLYPAMEDFQLDI---MIGEGPAARSIKLDLPPFTLVGA-------------------------------------------TRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGIL-------------GLEIEPQGAAEIAKRA---RGTPRIANRLLRRVRD.................................... 236
24 -22.9003pfi_A mol:protein length:338 Holliday junction ATP-dependent DNA helicase ruvB  ali model follow..  20  24..................................................................RPSNFDG-----YIGQESIKKNLNVFIAAAKKR----------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSG--------------DLAAILTNLSEGDILFIDEIHRL--------------SPAIEEVLYPAMEDYRLDI---IIGSGPAAQTIKIDLPKFTLIGATTRAGM------------------------------------------LSNPLRDRFGMQFRLEFYKDSELALILQKAALKL-------------NKTCEEKAALEIAKRS---RSTPRIALRLLKRVRD.................................... 232
25 -22.5001hqc_A mol:protein length:324 RUVB  ali model follow..  18  7..................................................................RPKTLDE-----YIGQERLKQKLRVYLEAAKAR----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEE-------------GDILFIDEIHRL--------------SRQAEEHLYPAMEDFVMDIV---IGQGPAARTIRLELPRFTLIGATT-------------------------------------------PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL-------------GVRITEEAALEIGRRS---RGTMRVAKRLFRRVRD.................................... 216
26 -18.5002xsz_A mol:protein length:367 RUVB-LIKE 1  ali model follow..  10  45............................................................................SGLVGQENAREACGVIV----------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGVPFCPMVGSEVYSTEIKKTEV-ENFRRAIGLRIKEGPPGIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITS--------PHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKIRAQT--------------GINISEEALNHLGEIGTK--TTLRYSVQLLTPAN------LLAKINGKDSIEKEHVEE............. 337
27 -18.0004xgu_A mol:protein length:424 Putative pachytene checkpoint protein 2  ali model follow..  13  128...................................................................PCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKIINVNRL-ILLTGPPGTGKTSLCKGLAQHLSIRMLEINSHSLFS-KWFSES-GKLVQKMFDQIDELAEDEKC-FVLIDEVESLGCRESSSSRSEPSDAIRAVNALLTQIDRIR-------------------RRDNVLILCTSNLEST------------------------------------------LDKALVDRADIVKNVGQPSDFARYSMLKSSIMELARIWPQDICDTKAPRNEFTEILFKIAQEA--RGLSGRAISML.......................................... 390
28 -17.8003syk_A mol:protein length:309 Protein CbbX  ali model follow..  18  17..............................................................YEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRDD--VGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEA------EILLQVMEN---------------------NRDDLVVILAGYADRMENFFQSN-------------------------------------PGFRSRIAHHIEFPDYSDEELFEIA-----------GHMLDDQNYQMTAETALRAYIGLRRNQPHFAARSIRNALDRARLRQANRLFTASSGPL...................... 274
29 -17.7003t15_A mol:protein length:293 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic  ali model follow..  16  2..........................................................................LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPL----ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES-GNAGEPAK-LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGN--------FSTLYAPL----------------------------IRDGRMEKFYWAPTREDRIGVCTGIDNVPAEDVVKIVD--------------NFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNS................................... 254
30 -17.7001g8p_A mol:protein length:350 MAGNESIUM-CHELATASE 38 KDA SUBUNIT  ali model follow..  15  26..............................................................................IVGQEDMKLALLLTA---------------VDPGIGGVLVFGDRGTGKSTAVRALAALLPTPVVDLPLGVSEDRVVGALDIERAISK-KAFEPGLLARANRGYLYIDECNLL--------------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGN----------------------------EEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERL------KVEAPNTALYDCAALCIALGSGLRGELTLLR--SARALAALEGAT----AVGRDHLKRVATMALSHRLRRD 330
31 -17.2003pvs_A mol:protein length:447 Replication-associated recombination protein A  ali model follow..  20  21..................................................................RPENLAQ-----YIGQQHLLKPLPRAIEAGH---------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKE---------IREAIERARQNRNAGRRTILFVDEVHRF--------------NKSQQDAFLPHIEDGTITF-----------------------------------------------------------------ATTENPSFELNSALLSRA-RVYLLKSLSTEDIEQVL----TQAMEDKTRGYGGQDIVL--PDETRRAIAELV---NGDARRALNTLEMMAD.................................... 220
32 -17.2006ap1_A mol:protein length:519 Vacuolar protein sorting-associated protein 4,Protein hcp1  ali model follow..  21  36..............................................................................VAGLEGAKEALKEAV------VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGES-EKLVKQLFAMA----RENKPSIIFIDEVDALTGTRGEG---ESEASRRIKTELLVQMNG------------------VGNDSQGVLVLGA--------------------------------------------IPWQLDSAIRRRFERRIYIPLPDLAARTTMFE-------------INVGDTPCVLTKEDYRTLGAMT-EGYSGS-DIAVVVKDALMQPIRKI.............................. 255
33 -17.1006b5c_A mol:protein length:307 Katanin p60 ATPase-containing subunit A-like 1  ali model follow..  17  27..............................................................................IADLEEAKKLLREAV------MWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTS--YRGES-EKLVRLLFEMA----RFYAPTTIFIDQIDSICSRRGTSDEHEASRR--VKSELLIQMDG-----------VGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKI---------EGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVALKKIAKSVSAADLEKYEK........................................ 299
34 -17.0005vq9_D mol:protein length:432 Pachytene checkpoint protein 2 homolog  ali model follow..  12  137............................................................................DSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRV-VLLHGPPGTGKTSLCKALAQKLTIRLIEINSHSLFS-KWFSES-GKLVTKMFQKIQDLIDDKDAVFVLIDQVESLTARNACRAGTEPSDAIRVVNAVLTQIDQIK-------------------RHSNVVILTTSNITEK------------------------------------------IDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKC-LEMIGFIENNVSKLSLLLNDISRKS--EGLSGRVLRKLPFLAHALYVQAPTVTIEGFLQALSLAVDKQFE.......... 423
35 -16.9003eie_A mol:protein length:322 Vacuolar protein sorting-associated protein 4  ali model follow..  18  20..............................................................................VAGLEGAKEALKEAV------VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS--WMGES-EKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGND-----------------SQGVLVLGATNIPWQLDSAIRRRFERRIY------------------------------LPDLAARTTMFEINCVLTKEDYRTLGAMTEG---------YSGSDIAVVVKDALMQPIRK......................................................... 238
36 -16.9002rko_A mol:protein length:331 Vacuolar protein sorting-associated protein 4  ali model follow..  18  23..............................................................................VAGLEGAKEALKEAV------VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS--WMGES-EKLVKQLFAMA----RENKPSIIFIDEVDALTGTRGEG---ESEASRRIKTELLVQMNGVGND-----------------SQGVLVLGATNIPWQLDSAIRRRFERRIY------------------------------LPDLAARTTMFEINCVLTKEDYRTLGAMTEG---------YSGSDIAVVVKDALMQPIRK......................................................... 241
37 -16.7002x8a_A mol:protein length:274 NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE  ali model follow..  19  12..............................................................................IGALEDIREELTMAILAPVRNPDQFKALG---VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN-MYVGES-ERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSDRETGASVR---VVNQLLTEMDGLE-------------------ARQQVFIMAA--------------------------------------TNRPDIIDPAILRP--GRLDKTLFVGLPPPADRLAIL----KTITKNGTKPPLDADVNL-------EAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267
38 -16.6001d2n_A mol:protein length:272 N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN  ali model follow..  16  28................................................................................GIIKWGDPVTRVL--DDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIERLLDYVPIGPRFSNL----VLQALLVLLKK------------------APPQGRKLLIIGT--------------------------------------TSRKDVLQEMEML---NAFSTTIHVPNIAGEQLLEALELLG------------------NFKDKERTTIAQQVKGKKIGIKKLLMLIEMSLQ.................................... 241
39 -16.5004lcb_A mol:protein length:367 Cell division protein CdvC, Vps4  ali model follow..  18  101..............................................................................IVGLDDVKEALKEAIIYPSKR---------PLGWPRGILLYGPPGNGKTMLAAAVANEIDSYFIHVDAASIMS--WLGEA-EKNVAKIFNTAREYSKKDNKAIIFVDEIDALLGTYTS----EVGGEVRVRNQFLKEMDGIM----------------DKNENYMVYVIGA----RLDEPFLRRFQKRIY------------------------------LPDFNQRFKYYTSKVKLGNVDLQELAKMTEG---------YSASDIRDIVQSAHMRVVKEMFEKNLSEPREIT............................................ 334
40 -16.4003eih_A mol:protein length:340 Vacuolar protein sorting-associated protein 4  ali model follow..  18  38..............................................................................VAGLEGAKEALKEAV------VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS--WMGES-EKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGND-----------------SQGVLVLGATNIPWQLDSAIRRRFERRIY------------------------------LPDLAARTTMFEINCVLTKEDYRTLGAMTEG---------YSGSDIAVVVKDALMQPIRK......................................................... 256
41 -16.4005eqt_A mol:protein length:257 Proteasome-activating nucleotidase  ali model follow..  17  7..............................................................................IGGLKKQLQELREAIELPLKHPELFEEVG---DPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRK-YIGEGARL-VHELFELA----KEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDG----------------------------------------------------------DPRGNVKVIAATNRPDILDPALLRP--GRFDRLIEVPLPDFEGRLEILKVHTRRMIAEMTEGASGADLKAIATEAGM--FAIRERRTYVTQEDFLKAVDKVL..................................... 246
42 -16.4004w5w_A mol:protein length:391 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic  ali model follow..  12  68............................................................................DNMMDGFYIAPAFMDKLVVHIT--KNFLTLPNIKVPLI-LGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPT--------NVQLPGMYNKEENARVPIICTG---------------------------NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIDKIKDEDIVTLVDQFPGQSIDFFGAL--------------RARVYDDEVRKFVESLGVEKIGKRLVNS................................... 319
43 -16.2001xwi_A mol:protein length:322 SKD1 protein  ali model follow..  18  14..............................................................................VAGLEGAKEALKEAV------IKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-EKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVD-----------------NDGILVLGATNIPWVLDSAIRRRFEKRIY------------------------------LPEPHARAAMFKLHNSLTEADFRELGRKTDG---------YSGADISIIVRDALMQPVRK......................................................... 233
44 -16.2005w0t_A mol:protein length:304 Protein MSP1  ali model follow..  17  44..............................................................................IGGLDPLISDLHESVIYPLMM--EVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDK-WYGES-NKIVDAMFSLA----NKLQPCIIFIDEIDSFLRERSST---DHEVTATLKAEFMTLWDG------------------LLNNGRVMIIGATNRINDIDDAFLRRLPKRFL------------------------------LPGSDQRYKILSVLDEFDLQLIADNTKGFSGSDLKELCREAALDAAKEYIKQKRQLIDSGTIDVNDTSSLKIRPLKTKDFTSGLEVL.............................. 302
45 -16.1003whk_A mol:protein length:270 Proteasome-activating nucleotidase, 26S protease regulatory subunit 6A  ali model follow..  17  19..............................................................................IGGLKKQLQELREAIELPLKHPELFEEVG---DPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRK-YIGEGARL-VHELFELA----KEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDG------------------FDPRGNVKVIAATNRPDILDPALLR------------------------------------------GRFDRLIEVPLPDEFSRAQILQIHSRKMLARSTDEFNGAQLKAVTVEAGM--IALRNGQSSVKHEDFVEGISEVQARKSKSV.............................. 266
46 -16.1001nsf_A mol:protein length:273 N-ETHYLMALEIMIDE SENSITIVE FACTOR  ali model follow..  18  62...............................................................................................................PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIERLLDYVPIGPRFSNL----VLQALLVLLKK------------------APPQGRKLLIIGT--------------------------------------TSRKDVLQEMEML---NAFSTTIHVPNIAGEQLLEALELLGN------------------FKDKERTTIAQQVKGKKIGIKKLLMLIEMSLQ.................................... 246
47 -16.0001lv7_A mol:protein length:257 FtsH  ali model follow..  22  14..............................................................................VAGCDEAKEEVAELV--EYLREPSRFQKLGGKIPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG------------------FEGNEGIIVIAATNRPDVLDPALLR------------------------------------------GRFDRQVVVGLPDVRGREQILKVHMRRVIARGTPGFSGADLANLVNEAAL--FAARGNKRVVSMVEFEKAKDKIM..................................... 253
48 -15.9003b9p_A mol:protein length:297 CG5977-PA, isoform A  ali model follow..  17  23..............................................................................IAGQDVAKQALQEMV------SVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS--YVGDG-EKLVRALFAVA----RHMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLP----------------GNPDGDRIVVLAA----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--ITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITIK............................................ 297
49 -15.9003h4m_A mol:protein length:285 Proteasome-activating nucleotidase  ali model follow..  20  19..............................................................................IGGLEKQMQEIREVVELPLKHPELFEKVG---EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGEGASL-VKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD-------------------ARGDVKIIGA--------------------------------------TNRPDILDPAILRP--GRFDRIIEVPAPDEKGRLEILKIHTRKMIAKMTEGCVGAELKAICTEAGM--NAIRELRDYVTMDDFRKAVEKIMEK................................... 261
50 -15.8003d8b_A mol:protein length:357 Fidgetin-like protein 1  ali model follow..  21  80..............................................................................IAGVEFAKATIKEIV------MLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS--WVGEG-EKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGAT----------------TSSEDRILVVGATNRPQEIDEAARRRLVKRLY------------------------------LPEASARKQIVINLCCLSEEEIEQIVQQSDA------------------FSGADMTQLCREA-----SLGPIRSLQTADIATI.................................. 308
51 -15.7004l15_A mol:protein length:334 Fidgetin-like protein 1  ali model follow..  18  58..............................................................................VAGLEGAKKALREIV------FKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTS--WVGEG-EKLVRALFSVA----RLKLPSVIFIDEIDSLLSSRSES---EHESSRRIKTEFLVQLDGVN----------------TAPDERLLVLGATNRPQELDEAARRRFQKRLY------------------------------LPEPESRTQIVQNLHDITNHNLERIRELTDG------------------YSGADMRQLCTEA-----AMGPIRDIGDDIETIDKDDIRAVTVMDFAEAARVVRPTVDDSQLDAYAA. 319
52 -15.5004lgm_A mol:protein length:295 Vps4 AAA ATPase  ali model follow..  16  28..............................................................................IVGLDDVKEALREAIIYPTKR---------PLGWPRGILLYGPPGCGKTMIAAAVANEIDSIFMQLDAASVMS--WLGEA-EKNVANVFKMAREESKKQNKAIIFIDQLDALLGVYST----EVGGEARVRNQFLKEMDGLLDK---------------SENYKVYVIGATNKPWRLDEAFLRRFQKRIYVPLPDYEQRLSLFKYYTSKIKLDTEVSLEELAKLT---------EGYTASDIRDIVQAAHIKVVKEMFKNNLGEPRTITLQDDILKVRMPSVNPELI.................................................. 282
53 -15.5001ixz_A mol:protein length:254 ATP-dependent metalloprotease FtsH  ali model follow..  30  18..............................................................................VAGAEEAKEELKEIV--EFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG..................................................................................................................................................................................................... 148
54 -15.4005uie_A mol:protein length:437 Vacuolar protein sorting-associated protein 4  ali model follow..  19  135..............................................................................VAGLEGAKEALKEAV------VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS--WMGES-EKLVKQLFAMA----RENKPSIIFIDEVDALTGTRGEG---ESEASRRIKTELLVQMNG------------------VGNDSQGVLVLGA----QLDSAIRRRFERRIY------------------------------LPDLAARTTMFEINCVLTKEDYRTLGAMTEG---------YSGSDIAVVVKDALMQPIRK......................................................... 353
55 -15.4001sxj_B mol:protein length:323 Activator 1 37 kDa subunit  ali model follow..  13  16..................................................................RPQVLSD-----IVGNKETIDRLQQIAKDG---------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT--------------AGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL--------------SKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGGLVNADNVFKIVDSPHPLIVKKM--------LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLA................................. 278
56 -15.3003vfd_A mol:protein length:389 Spastin  ali model follow..  20  117..............................................................................IAGQDLAKQALQEIV------SLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS--YVGEG-EKLVRALFAVA----RELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSA-----------------DDRVLVMGATNRPQELDEAVLRRFIKRVY------------------------------LPNEETRLLLLKNLSPLTQKELAQLARMTDG---------YSGSDLTALAKDAALGPIRELKPEQNMSASEMRNIRLSDFTESLKKIKRSVSPQTL..................... 374
57 -15.3004d80_A mol:protein length:316 AAA ATPASE, CENTRAL DOMAIN PROTEIN  ali model follow..  16  43..............................................................................IVGLEDVKEALKEAVVYPSKR---------PLGWPRGILLYGPPGCGKTMIAAAVANELDSEFIHVDAASIMS--WLGEA-EKNVAKIFKTARELSKKENKAIIFIDELDALLASYTS----EVGGEARVRNQFLKEMDGLADK---------------NEISKVYVIGATNKPWRLDEPFLRRFQKRIYITLPDKAHRLELLKHYSSKVKLDPNVNLEELAELT---------DGYTASDIRDIVQSAHMRVVKEMFEKNLQEPRAINMDDEVLKVRKPSVNQDML.................................................. 297
58 -15.3005wc0_A mol:protein length:472 Meiotic spindle formation protein mei-1  ali model follow..  20  195..............................................................................IIGMHDVKQVLHEAV------LLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSS--WRGDS-EKIVRLLFELA----RFYAPSIIFIDQIDTLGGQRGNSGEHEASRR--VKSEFLVQMDGSQNK-----------------DSRRVFVLAA----ELDEALRRRFEKR--------------------------------LPDIDARKKLIEKSPKSDEINYDDLAARTEG------------------FSGADVVSLCRTA-----AINVLRRYDTKSLRGGELTAAMESLKAELVRNIDFEAALQ.......... 448
59 -15.2005gjq_J mol:protein length:406 26S protease regulatory subunit 8  ali model follow..  18  149............................................................................EMIGGLDKQIKEIKEVIELPVKHPELFEALG---AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-FIGEG-ARMVRELFVMA----REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDG------------------FEATKNIKVIMATNRIDILDSALLR------------------------------------------GRIDRKIEFPPPNEEARLDILKIHSRKMLTRGINLRKIAELMPGASGAEVKGVCTEA-----GMYALREVTQEDFEMAVAKVMQKDSEKNMSIKKLWK.............. 406
60 -15.2005ubv_A mol:protein length:246 ATPase domain of i-AAA protease  ali model follow..  23  8..............................................................................VHGCDEAKEELQELV--EFLRNPEKFSNLGGKLPKG-VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNAA----KAKAPSIVFIDELDAIGGRRNSRDATY---VRQTLNQLLTEMDG------------------FAQNSGVIILGATNFPESLDKALTR------------------------------------------GRFDRHVHVSLPDVRGRIAILKHHAKKIIAARTSGLSGAELENIVNQAAV--HASKEKAKAVMQAHFEWAKDKVI..................................... 244
61 -15.1005kwa_A mol:protein length:497 Proteasome-associated ATPase  ali model follow..  19  147............................................................................ADIGGLSRQIEQIRDAVELPFLHKELYREYS---RPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKFVGET-ERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETT--VVPQLLSEIDGVE-------------------GLENVIVIGA--------------------------------------SNREDMIDPAILRP--GRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLAEFDGDRSCIKAMIEKVVDRM-----YAEIDDNRFLEV...................................... 393
62 -15.1006epc_M mol:protein length:442 26S proteasome regulatory subunit 6A  ali model follow..  17  189............................................................................SDIGGLDKQIQELVEAIVLPMNHKEKFENLG---QPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM-FIGDG-AKLVRDAFALA----KEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------------------FQPNTQVKVIAATNRVDILDPALLR------------------------------------------GRLDRKIEFPMPNEEARARIMQIHSRKMLARCTDDFNGAQCKAVCVEAGMIALRRG--ATELTHEDYMEGILEVQAKKKANL.............................. 438
63 -15.1002zam_A mol:protein length:444 Vacuolar protein sorting-associating protein 4B  ali model follow..  18  136..............................................................................VAGLEGAKEALKEAV------IKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-EKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVD-----------------NDGILVLGATNIPWVLDSAIRRRFEKRIY------------------------------LPEAHARAAMFRLHNSLTEADFQELGRKTDG---------YSGADISIIVRDALMQPVRK......................................................... 355
64 -14.9005t0g_E mol:protein length:403 26S protease regulatory subunit 10B  ali model follow..  18  149..............................................................................IGGLSEQIRELREVIELPLTNPELFQRVG---IPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDK-YIGES-ARLIREMFNYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG------------------FDTLHRVKMIMATNRPDTLDPALLR------------------------------------------GRLDRKIHIDLPNEQARLDILKIHAGPIIVKLSDGFNGADLRNVCTEAGMFAIRADFVVQEDFMKAVRKVADSKKLESKLDYKP............................ 402
65 -14.9003jco_M mol:protein length:434 26S protease regulatory subunit 6A  ali model follow..  18  183..............................................................................VGGLDKQIEELVEAIVLPMKRADKFKDMG---RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEG-AKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG------------------FSSDDRVKVLAATNRVDVLDPALLR------------------------------------------GRLDRKIEFPLPSEDSRAQILQIHSRKMLARSTDEFNGAQLKAVTVEAGMIALRNG--QSSVKHEDFVEGISEVQARKSKSV.............................. 430
66 -14.9005kzf_A mol:protein length:513 Proteasome-associated ATPase  ali model follow..  20  156............................................................................ADIGGLSRQIEQIRDAVELPFLHKELYREYS---RPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKFVGET-ERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGV-SSDVETTVVPQ-LLSEIDGVE-------------------GLENVIVIGA--------------------------------------SNREDMIDPAILRP--GRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLAEFDGDRSCIKAMIEKVVDRM....................................................... 390
67 -14.8002xsz_D mol:protein length:378 RUVB-LIKE 2  ali model follow..  15  61..............................................................................MVGQLAARRAAGVVL----------EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGTPFTAIAGSEIFSLEMSKTEATQAFRRSIGVRIKEGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF----DEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPH---------GIPIDLLDRL-LIVSTTPYSEKDTKQILRIRCEE--------------DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAAS------LVCRKRKGTEVQVDDIKR............. 343
68 -14.8003jco_K mol:protein length:428 26S protease regulatory subunit 6B homolog  ali model follow..  18  174..............................................................................VGGLDMQKQEIREAVELPLVQADLYEQIG---DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YLGEG-PRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG------------------FDQSTNVKVIMATNRADTLDPALLR------------------------------------------GRLDRKIEFPSLDRRERRLIFGTIASKMLIIRNDSLSGAVIAAIMQEAGLRAVRKYVILQSDLEEAYATQVKTDNTVDKFDF.............................. 426
69 -14.6002c9o_A mol:protein length:456 RUVB-LIKE 1  ali model follow..  10  39..............................................................................LVGQENAREACGVIV----------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIG----LRIKETKEVYEGEVTELTPCETENKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKI-------------RAQTEGINISEEALNHLGEIGTK--TTLRYSVQLLTPA------NLLAKINGKDSIEKEHVEE............. 432
70 -14.6003u5z_B mol:protein length:324 DNA polymerase accessory protein 44  ali model follow..  17  18...............................................................QKYRPSTIDE-----CILPAFDKETFKSITSKGK---------------PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS--------DCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAES-------------QRHLRSFMEA----------------------SSNCSIIIT---------------------------------------------IDGIIKPLQSRC-RVITFGQPTDEDKIEMMK----QMIRRLTEICKHEGIAIA-DMKVVAALVKKN-----DFRKTIGELDSYS..................................... 220
71 -14.5005gjq_I mol:protein length:440 26S protease regulatory subunit 4  ali model follow..  18  185............................................................................ADIGGLDNQIQEIKESVELPLTHPEYYEEMG---KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG------------------FDSRGDVKVIMATNRIETLDPALIR------------------------------------------GRIDRKIEFPLPDEKTKKRIFQIHTSRMLIMAKDDLSGADIKAICTEAGLMALRER--RMKVTNEDFKKSKENVLYKKQEGTP............................. 435
72 -14.5003jco_J mol:protein length:405 26S protease regulatory subunit 8 homolog  ali model follow..  20  150..............................................................................VGGLTKQIKEIKEVIELPVKHPELFESLG---AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIGEGSR-MVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG------------------FETSKNIKIIMATNRLDILDPALLR------------------------------------------GRIDRKIEFPPPSVAARAEILRIHSRKMLTRGINLRKVAEKMNGCSGADVKGVCTEA-----GMYALREVTQEDFELAVGKVMNKNQETAISVAKLFK.............. 405
73 -14.4003jco_L mol:protein length:437 26S protease subunit RPT4  ali model follow..  17  183..............................................................................IGGLTEQIRELREVIELPLKNPEIFQRVG---KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIGES-ARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG------------------FDNLGQTKIIMATNRPDTLDPALLR------------------------------------------GRLDRKVEIPLPNEAGRLEIFKIHTAKVAVKMSDGFNGADIRNCATEAGFFAIRDDHINPDDLMKAVRKVAEVKKLEGTIEYQK............................ 436
74 -14.4003jco_I mol:protein length:437 26S protease regulatory subunit 4 homolog  ali model follow..  17  184..............................................................................IGGLESQIQEIKESVELPLTHPELYEEMG---KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLGDG-PRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG------------------FDDRGDVKVIMATNKIETLDPALIR------------------------------------------GRIDRKILFENPDLSTKKKILGIHTSKMLVTTKDDLSGADIQAMCTEAGLLALRER--RMQVTAEDFKQAKERVMKNKVEEN.............................. 431
75 -14.3005gjq_K mol:protein length:418 26S protease regulatory subunit 6B  ali model follow..  19  167..............................................................................IGGMDIQKQEVREAVELPLTHFELYKQIG---DPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQK-YLGEG-PRMVRDVFRLA----KENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------------FDQNVNVKVIMATNRADTLDPALLR------------------------------------------GRLDRKIEFPLPDRRQKRLIFSTITSKMYVARPDKISGADINSICQESGMLAVREN--RYIVLAKDFEKAYKTVIKKDEQEH.............................. 414

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.