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Query: gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117), from B.fragilis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MADVKEKINLLDVIPFRSENITAEKGSDGTVTIAFPRFKYEWMRRFLLPKGMSADIHVRLEDHGTAVWELIDGKRTVRRIIEELAEHFNYEENYESRITAYITQLQKDGFVKLVIENLast
1 -25.200PF05402.12; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)  ali follow..  18  2.................................................VLLYPEGMVKLNDSAAEILRRCDGERNIAQIVADLEQSFATT-GLQKDVESFLQAAQERGWI...... 62
2 -10.200PF16221.5; D8PH49_9BACT/341-418; winged helix-turn-helix  ali follow..  28  39..................................................................VLNLSDGDHTLLKIAERAGLPF-------LTIKLAADALEGQGLLR..... 77
3 -7.500PF05331.11; Q9L139_STRCO/5-115; Protein of unknown function (DUF742 topsan)  ali follow..  19  40..........................................................GMQSEHTAILRLTEAPTAVVEIAAELRLPVSI-------TKILLSDLHAAGRVSARHP. 90
4 -7.160PF13034.6; B7GJY9_ANOFW/358-434; Protein of unknown function (DUF3895 topsan)  ali follow..  12  3............................................................ELLQNSIFDYVQSIISAKELSVYLVDKCNAPNEIYGDVCKFLDYLAKQGIIQLLRKD 69
5 -7.090PF09079.11; CDC62_THEAC/301-381; CDC6, C terminal winged helix domain  ali follow..  13  16.........................................................................TGEIYENYRRICDDLGFSPLSPRRISDLLTELADYGLLVMDDRN 59
6 -6.990PF03965.16; Q8CX17_STRA5/3-117; Penicillinase repressor  ali follow..  17  7.............................................................EIMRVVWAQ--QNTTSNEILAVLLEKYDWTPST---VKTLLRRLLDKGYVSREKMG 57
7 -6.890PF16155.5; G8MLV5_9BURK/16-177; Domain of unknown function (DUF4863 topsan)  ali follow..  12  4................................................................LPFLEEVRDMTADTHIEQWLNTKYGVDSALYQDLARLIRQGVEEGWA...... 50
8 -6.810PF01978.19; Q8TXT4_METKA/25-102; Sugar-specific transcriptional regulator TrmB  ali follow..  13  5.........................................................FGIKEDEAELYLKLEAPFTVEDVAEIINRS-------RSTAQKMLQSLVRVGMVE..... 57
9 -6.680PF17726.1; Q5FAK4_NEIG1/184-252; Dam-replacing HTH domain  ali follow..  23..........................................................................SQMYEFENKLSIQFPQNNHIKDKIRQQLQILRDQNMIEFIGR. 64
10 -6.520PF06236.11; B5GYP9_STRC2/21-149; Tyrosinase co-factor MelC1  ali follow..  10  80.........................................................VLIDGRELHVMRHGKMG--------SAINHYERFATPLDAARTAVVSLKGAAVVPF.... 129

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 4 6 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.