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Query: gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221), from B.fragilis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPTIKKVQPVKVVAPFLNSQSESPVPLDALTDQEKVSDLYFLKGTVHQIAKPYLSINNCTFKQQIFSECQFKSAQLTDVRFENCDLSNVSFAGTTFYRVEFISCKLLGTGFLEATLNHVLMDHCYGQYINLSMVKMRTARFSHCNFRNGSLNDSKLMPAAFDTCELLEADFSHTSLKGIDLRNSRIAGIQLNIADLKGAIVSSLQAIDLLPLLGVKIEDDLast
1 -33.500PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)  ali follow..  59  1....................................................................................................EFISCKLLGTNLSETTMNHVLLHDCNAGYINLAMSKMNQVRFAHSQLRNGSLNDCRFSSVAFESCDLVEADFSHAPLRGID........................................ 81
2 -15.800PF00805.22; A9C0H0_DELAS/87-126; Pentapeptide repeats (8 copies)  ali follow..  32  1..........................................................................ANLTDALFCQSDLNNTNWELAKLASARFLEVKLTGARFGG........................................................................................................... 40
3 -11.900PF12541.8; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)  ali follow..  97.....................................HHVALENIVFTDATETLWNCDNVSIHGMSAKGDYFAM-GSSNMEIEGLTLDGNYSFDGC-KNVTIRNSHLLSKD-AFWNCENITVYDSFVS-GEYFGWNAKNVTLINCTIESEQ-GFCYMENLVMKDCKLLNTNINSNIDSVKNPIHGRIIADHINEIIFDNDEMKPEDTTII........... 275
4 -9.360PF01696.17; E1B55_ADE12/96-479; Adenovirus EB1 55K protein / large t-antigen  ali follow..  12  119.................................................VGLDGITFINVRFAGDKFKGIMFEANT--CLVLHGVYFLNFS-NKVSARGCTFYGCWLVGRPKSKLSVKKCLFEKCVLALIVEGDAHIRHNAASENACFVLLKGMAILKHNMVCGVSVTCADGNCHTLKTVHISHSRHCWPVCDHNMFMRCTIHLGLRRGMFRPSQCNFSHS 304
5 -8.380PF13306.6; A2EUR9_TRIVA/224-352; BspA type Leucine rich repeat region (6 copies)  ali follow..  12  2.......................................................FIGSYAFHSCKMTAISIPSTCIGENAFSECSLSDIIFVDINISNHAFYCTNISSIIVPRLSIGNSSFELSNLKQMVFPSSEIGSFAFSKTQLKSIEIPNTQIGEYAFYHLNLD..................................................... 129
6 -7.540PF05264.11; Q9GSA6_CHOFU/1-138; Choristoneura fumiferana antifreeze protein (CfAFP)  ali follow..  10  20...................................................................................TCVNTNSQITNSQCVKSTATNCYIDNSQLVDTSI---------CTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGCSISTCTITRTPAAACKISGCSLSA................. 137
7 -7.530PF16318.5; Q8A8Y7_BACTN/184-327; Domain of unknown function (DUF4957 topsan)  ali follow..  12  41.........................................................AGLKIKFIDFDFDADTYSASNSR---GVVMFNSTEAGIVQQPYVFQSCTIKDLP-NGYALSSLSITDCLVSIAFNGQGWIKDLSFSNSTIYYT....................................................................... 144
8 -7.230PF06403.11; Q9YHE0_PETMA/1-138; Lamprin  ali follow..  2.........................................................................AATMQALLVIALLHLATATPVVTKHKVSTFSTGFLGHPVGGLGYGGLGYGGLGYGGLGVAGLGYGGLGYPGAALGGAYTHHAAGLVHPYGGLGYHAAPYHHAL............................................. 104
9 -7.200PF13229.6; A8XCU4_CAEBR/377-555; Right handed beta helix region  ali follow..  9........................................................................QQINIRRSTAYSNNGTGIYVGTSELENVVVNANGFYGIHVEVEK--RLEENKFQMDGVNVSAHR-AKIGIANSRFHDNKKGGVRISGQF-PNIIFRDCRFLRNSGEIIQFNDFKNASLIMDKCEFVS...................... 147
10 -6.650PF03382.14; A5IZG8_MYCAP/271-390; Mycoplasma protein of unknown function, DUF285 topsan  ali follow..  12  7.......................................................................FSHAAEFNQDISKWDTSKVRNISGVFDGAAKFNSPLNNWNVSSVTQMSSFFAGATSFNQDLNLWNTSNVQDMESMFQDATLFNGNIDDWNVSNVNKMYLMFGDAENFSRDLSK..................................... 119

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.