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Query: gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245), from B.fragilis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMCELGYFISSYRLNPYKFRFFPISNYRIHRSGMIFLLYFCCKPKKNIMKKILFILFTVQFILIPRITGSYGANSIGNNHGHSVTNQGKKTIKKDIFGDTVIEDNHGNRKTIKKDIFGDTVIEDNRGNRKTIRKDIFGDTVIEDNRGNRKTIKKDIFGDTVIENNCGNRKTIKKDIFGDTVIEDNRGNRKSIKKDIFGNTVIENNKGYKKTIKTDIFGNKIIEDNHGKKQIIKKDIFGNVIIENYLast
1 -19.900PF06661.11; Q2K2F2_RHIEC/43-358; VirE3  ali follow..  10  2...RLEMPKKKRKYTVDMEMVD--------KLDAGFRGEISYKIFGNKQLRIDRPKELTREKKSWARVTSHQYAEDGTLRTKHVKYRDEEKWERDETGSLV-------RTRYVNRGRLSGRLFRPVSEELSAPEPG--RKLTRQVGSRRETFERDDKGGLELRPGFSRNTTKSEDRHTSQTKIRKLGGTFSSLLDKEGNEVGRDILSHRSAIYDESTKQLTSIKHTFGESQYLSAEIKKVSKKIL 281
2 -17.800PF06788.13; YNFC_SALTY/1-236; Uncharacterised protein family (UPF0257 topsan)  ali follow..  10  29...EMASFSNEFDFDPLRGPVKDF-------------SQTLMSENGEVAKQV-----------------TGTLSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQ--LAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPL------GKTTINSQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVVDESVKPAVSHHYTIKNRIDY--Y 236
3 -8.680PF05593.14; Q8X4I8_ECO57/575-612; RHS Repeat  ali follow..  1.........................................YDSRGQLI----------AVKDTQGHETRYEYNAAGDLTTVIAPDGSR............................................................................................................................................................ 38
4 -8.330PF15283.6; D3IEK1_9BACT/56-257; Domain of unknown function (DUF4595 topsan) with porin-like fold  ali follow..  1.......................................IQTNEKGQIIS-----------MKSADKNIIFKYTEAVTRSIAPSPDVIMTVTGRDINKVVNLYLNKDGYVLKCDKIDYYYEDRPETNHMYNFSYDRDGHLVTIKGGEEVWSWIYENGDITRVERTDHGEKDDEPWKLYYTSASHLSPIVNKGYLMLFNENIPADLNELSFAYFAGMLGTRVVTGGGESNFSWTLNESRYPTS... 202
5 -7.630PF07202.13; C3YDC5_BRAFL/3-178; T-complex protein 10 C-terminus  ali follow..  18  8.........................................................RRVITFSNGTRKEISAD--GQTLIVTFCNGDIKQIMPD--QRVIYYYAEAQTTHTTYPD-GLEILQFPNSQMEKHYPD--GTKEITFPDQTIKYLFPN--GDEESIFQDGTVLRVSKS--GDRVVEFANGQREIHTLN---YKKREYPDGTVKTVYPD--GKQETRYSNGRIRVKDKD--GNIVVDK. 176
6 -7.480PF12930.7; R6S6Z9_9BACE/1-127; Family of unknown function (DUF3836 topsan)  ali follow..  32.........LIYNPIEENGMTIGQ-KMDGSTLANYMKYNYKYDDSKRMVESEALRWDSDKDEWQKDLRINYIYEGKTVTTNYYKWNTKKQAYVLV...................................................................................................................................................... 119
7 -6.100PF06403.11; Q9YHE0_PETMA/1-138; Lamprin  ali follow..  15................................................................................................HLATATPVVTKHKVSTFSTGFLGHPVGGLGYGGLGYGGLGYGGLGVAGLGYGGLGYPGAALGGAYTHHAAGLVHPYGGLGYHAAPYHHALGGLGYPLGIGAGVVAPHVVNSK..................................... 126
8 -5.920PF14404.6; B5H3E9_STRC2/17-79; Ribosomally synthesized peptide in Streptomyces species  ali follow..  13  12..AELAPVVDQYSYDA--------------------TLQLNVLPDGRPAIMDRVLLAAVGTTTSTAGSATHFDD........................................................................................................................................................................... 63
9 -5.700PF15152.6; B5M447_PIG/46-121; Kisspeptin  ali follow..  19  55VLVQREKDLSAYNWNSFGLRY................................................................................................................................................................................................................................ 75
10 -5.090PF09799.9; R0KLJ9_ANAPL/1-107; Predicted membrane protein  ali follow..  11  14FLATLAMIFYKRQVFSYPDNFLAPDLTLLFIMAILEALRLYLGSKGNLTEEEAPLGLSLVITVGSVILSVY.............................................................................................................................................................................. 84

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 8 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.