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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -30.100PF04773.13; Q2YA72_NITMU/40-132; FecR protein  ali follow..  21  1...................................................................................................RLHETIPGQRLTVLVTPDIAISLDADSSVA--VTNTEPSGIELLRGNAFFDVRGSQPGKLNLKVGATYIRDTGTRFSVNK--RAAGGSVAVANGQVE................................................................................................................... 93
2 -21.400PF16344.5; A6LGL7_PARD8/234-304; Domain of unknown function (DUF4974 topsan)  ali follow..  20  2...............................................................................................................................................................................................................................................LFFDEMPLSDIVKELNRSYNVKIHIADEQLTHNRFYALFNREQTIYNVLDIITATNQVRYKVEGDSILL... 71
3 -7.280PF07202.13; C3YDC5_BRAFL/3-178; T-complex protein 10 C-terminus  ali follow..  12  19....................................................................................................KEISADGQTLIVTFCNGDIKQIMPDQRVIYYYAEAQTTHTTYPDGLEILQFPNSQME---KHYPDGTKEITFPDQTIKYLFPNGDEESIFQDGTVLRVSKSNGQREIHTLNYKKREYPDGTVKTVYPDGKQETRYSNGRIRVKDKDGNIVVDK.......................................................... 176
4 -6.980PF02992.14; U5CUH5_AMBTC/113-319; Transposase family tnp2  ali follow..  15  4...............................................................................................................LRHPADAEEWKQFDR--LHP-SFAVEPRNVRLG------LATDGFNPFGNMSNSYSLPVICVPYNLPPW----------------KCMSSESLLLTLLIPGPSSPGKDIDVFMRPLIDELKQLWETGVETRDAYNGTVFSMRAAVLWTINDFPAYALMSGWSTKGYMA................................ 147
5 -6.070PF01324.19; Q6NK15_CORDI/406-559; Diphtheria toxin, R domain  ali follow..  14  3..........................................................................................................GHKTQPFLHDGYAVWNTVEDSIIRTGFQGESGHDIKITAE-------NTPLPIAVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIGV--------GYQKTVDHTK--VNSKLSLFFEIK.................................................. 154
6 -5.990PF07481.11; Q89TX4_BRADU/112-279; Domain of Unknown Function (DUF1521 topsan)  ali follow..  12  3......................................................................................................HEVKDGKATINLGDKYTITANEKDG-TWTVRNNQTGHVTKIHGDPHVDANGDGKDDFDFKKDMTFQLDDGTKITVNNVDYGNGERLTITNGHNAMVVEGLGDDKDGKNNLRVTQSNAGMTLDELTPDGAQTIHESG......................................................................... 141
7 -5.860PF09203.11; K0F8H9_9NOCA/29-198; MspA  ali follow..  11  1...................................................................................................................DGWVVNVFKTDE---NLAATAYTREGFYSVKGAVSIEGEGRAPVNAAAVQIGLQL-GCQIDVST-VNGVVTVSQYPSGLVGGNAGVNPSVSGTLKPGGITQLVLGAKSLNG---------AYGSIATREAEMK----SVRSVVTVSLATPTSTDSFSVYGDPV................................. 170
8 -5.790PF03076.14; GP3_EAVBU/1-160; Equine arteritis virus GP3  ali follow..  19  34...............................................................................................................MHTTSDTSVHLFYAANVTFPSHF-----------QRHFAAAQD----FVVHTG---YEYAGVTMLVHLFANLVLTFPSLVNCSRPVNVFANASCVQVVCSHTNSTTGLGQLS----------------FSFVDEDLRHIRPTLICWFALLLVH............................................... 153
9 -5.430PF09343.10; I7E171_PHAIB/4-209; Conserved hypothetical protein 2217 (DUF2460 topsan)  ali follow..  12  8...............................................................................................SLSFGSIGGPERRTDVVTLANGHE--PWTHSRRRYDAGLGLRGLEDIEALIAFFEARQGQMYGFRWKKSARATLDVTFGDQVIGMGDGAQQVFQLSK---TYRSGSFAYQRPITKPVAGSVRIGIEQDALQETVDYTLDSTLGTITLAHPPEAGLSVKAGFEFDVPVRFDTDRIQTSVASFQAGDVPNVPVV........................ 203
10 -5.350PF02311.19; Q8KJH7_RHILI/35-171; AraC-like ligand binding domain  ali follow..  4.......................................................................................................................................................................LDYLAADYHRQDFSHNEYLIGLIERGVHDVWCRGESGTVATFAPGE----------PHFGGAGDDLGWSQKIFYMPEGLVRQVLEDSSQTEPGTIDFKSPFQENAPVA------HGLSAFWRLLEHEHSSALEIEEHLIRFL.. 137

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.