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Query: gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447), from B.fragilis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQGIKNLTQGPINKQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAVGSVGILTWMSGSISLLNKVGSEVSVGQSIGAQNHEDARNFASHNITIALIISLCWGGLLFLLARPIIGIYELEAHITENAIAYLRIISTGLPFIFLSAAFTGIYNAAGRSKIPFYISGTGLVLNILLDPLFIFGFGLGTNGAAYATWISQAAVFGIFIYQLRCRDALLGRFSFFTRLKKKYTHRILKLGLPVATLNTLFAFVNMFLCRTASEQGGHIGLMTFTTGGQIEAITWNTSQGFSTALSAFIAQNYAAGRTDRVIKSWHTTLLMTSIFGTLCTLLFVFFGNEIFALFVPEQAAYEAGGVFLRIDGYSQLFMMLEITTQGVFYGIGRTIPPAIISITCNYMRIPLAILFVRMGMGVEGIWWAVCVTTVAKGLILAGWFALIKRKVLSRPILLast
1 -26.400PF03023.14; MURJ_ECOLI/28-479; Lipid II flippase MurJ  ali follow..  11  5...........................................FGAGMATAFFVAFKLPNLLRRIFAAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPR---INFHDAGAMRVVKQMGPAILGVSVSQI-SLIINTIFASFLASGSVSWMYYADRLMEFPSVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGP-LKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWM 415
2 -25.900PF01554.18; DTX37_ARATH/57-217; MatE  ali follow..  18  1.....................PAIFVYVINNGMSILTRIFAGHVGSFELAAASLGNSGFNMFYGLLLGMGSAVETLCGQAHGAHRYEMLGVYLQRSTVVLILTCLPMSFL-FLFSNPILTALGEPEQVATLASVFVYGMIPVIFAYAVNFPIQKFLQSQSIVTPSAYISAATLVIHLILSWI......................................................................................................................................................................................................................................................................... 161
3 -18.300PF01943.17; O26442_METTH/7-278; Polysaccharide biosynthesis protein  ali follow..  11  1...............IVKNIGVTGSAQILTALMSFVFMIYLARLGEAGFGKYNFAFSLTTLLVTFT---DLGVNQLLVREI-ARERDLSSYYVNNAVFLKIPLSILTFVLIAVLAWTF--------NLSSDASILLYLFGIYNILLTVSGTYLSLFQAWERMEYVALFQIIERLFIVTLGLGVLI-MGYGLMVVAWVYVFAGILDIAVAASLSFRR-----FIRPSRSIDTGLQKKLLLMGLPFGLNSLFAVFFFKIDTVLLGLLRDDVAVGIYNAAYNPLALSMIVAGMVSAAVYPVMSRYF................................................................................................................................................ 272
4 -18.200PF07260.11; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)  ali follow..  11.............WPLIRFLLPLAITNIAIDFGEQALNRGIASVKEEMLASYGLAYSLMKFFTGPMSDFKNVGLVFV------NSKKERSKAILCMAVAGVIAIILHVLIAYTDLGYYIKLHHVDDSVGSKTRKAFLYLALFPLLDAMAWIHAGILLKHKYSLLVGSASISDVVAQIVFVAILLQSNLECFEPLILALYMGALVRFTIVGLGYYC-HDITPESTSTDQGGDATIKKMLSFWWPLALILATQRISRPIVNLFVSRDLKTEAVAVLTATYPVGHMPYGWLTELRAVYPAFD------MNNPTNKLTSGVMVTKSHIKKFTLCCFILSLAMCFIVFWS...................................................................................................... 344
5 -18.100PF14667.6; E6U1Q3_BACCJ/375-523; Polysaccharide biosynthesis C-terminal domain  ali follow..  17  2.......................................................................................................................................LKYYAPVAILFSIFAVTSSLLQGINRQRYAVIALLAGLIFKLTFTYLMI----LGPAGAILATGVGYVIAIGVNVWAIGK........................................................................................................................................................................................................................................ 79
6 -12.900PF13440.6; K5CQA8_9BACE/33-325; Polysaccharide biosynthesis protein  ali follow..  13  9.................................................DDFGIVAIATVIIAFFNLFTDMGVSPAIVQ-----HKTLTREELSDIFSFTVWTGIGISVLFFAASWLIADYYNSDI------RTLCQLLSVNLFFASATIVPGALFYRNKEFKFIAVRSFVIQISAGAAA-VTAALCGAGLYALIINPIVSSILIFAISYQRYPQRLR--------LTLGLTVLRKIFSYSAYQFLFNVINYFSRNLDKLLIGKYMGMSDLGYYEKSYRLMMLPLQNITQITPVMHPIFSD---QDDKGKLATSYERILRFLAFIGLPLSVLLFFTAEEVTLIIFGDQ................................................................................................... 287
7 -9.020PF04506.13; H9J737_BOMMO/8-547; Rft protein  ali follow..  1.............SSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNV--RLLLLESTILFLSREPFNRACLGRTDGFGWSHLINQIWLSVPISSLLSIVFVYIWLNWLP------LGNPEHAYQYTFGCWSVAFSCVLELCSANLALVAQHFCFIKLKIVLDTLHIFVRTLLFLSIII--SLALIAFSIAQVGSIFVVVLSYYIFFYWYVKNKPLYAKGALFNKKLSTLTFSFAKQGFVKQLLTEGEKYVMS--MSPVMTFSEQATYDVVNNLGSLAARFVF-IEDSSYFYFTQMVSRDKIQESCAVLSNVCKTVSSIGLIVLVFGQSYSHTLLLLYGGEA---GLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQLNSYNMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKYKD....... 470
8 -6.490PF16933.5; H6NPM0_9BACL/1-460; Putative exopolysaccharide Exporter (EPS-E)  ali follow..  6FKLQKLFREDYTSLQFRAYAYASFIAALISVLSVSIVNFLIRRYGGIGEQEAQLFIVTVSYCFIFSQILSGGWQLVVTRFLALGRLDIITPVYTGISRLVMALSAVLVLLFYWNAP--------------LPFSYKLISAVLFLTVGQIWLSMVFLSAAKNYKIISWAFLTGGLLAVASVLILLFASHRDASNVLLGFTFGMLVTMAMLAVVLLRTFPSKRMENPYGFLHYDKYPSLLAAGFSYNLGVWIDKILIWLGPSGVTVEGTAVFLAYLTVVPSLVLFVVSVETRFYDKYRKFYGYITNGGTLEMILAVLWNEMLRMAKLQGSLTLFLIVVSGFLLESFGYGPLTADI----FRIYSLGAMAGTLMLTVILIMLYFEDRQGAWVTSLLFLSLNALFTLGVLPPGLDFYG--FNYFLAAFIAFTYSAWRLLGFLQRI...... 455
9 -5.950PF00375.18; Q8EU68_OCEIH/3-398; Sodium:dicarboxylate symporter family  ali follow..  12  44.............NLIMMLVVPLVFVSITLGTAGLGEPAKLGKIGVSTVGFFLCTTALALTILGLGYLIKPGEAGMFDTANANYEPSEIAAMSSGDMLQIIAFAIFIGIALAYLGEKTQGIHSLFEQANEILNWLVMVVMKFAPYGAFALIASAIGGAGLDAVGSMVSYMLTVILGLIVHGLLVYGLII-LGKQNPFTFYKGFFPAMSVAFSTSSSNATLPLSMKTAQENLGVKKEISSFVQPLGATAIMQAVATVFISQVYDIPLGFSELLMVVLVATLASVGTAGVPGVGLIMLAMVLSQVG............................................................................................................................................... 358
10 -5.290PF12832.7; A7RI07_NEMVE/55-515; MFS_1 like family  ali follow..  12  182...............MWLMILVVGGEFLEAPTFILADTALLQKLQEKR----------TRLFGSLGYATASFIVGAVLETTRFQYCGETHNDYKYLFYIFAGVMLLALLFAAVLFCAVWKILLQPKYAF-----MTIAWFLGFSNGLIFNFLNWYLEDLGASKLLMSATTMRAAGLLIA--FFVNSYLTDRLGHICVSFLSILSYFSLFVWLAVMRNPWL-----------------------AFPLEFLEGLTYGTSWSTCVTYMAD--ATPMSGAATMQGILQGVYWGLGGGLGAILGDEYGAVPSFYA........................................................................................................................................ 461

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.