current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225), from B.fragilis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst MKILIIEDEPSLRELIQRSLEKERYVVEAAADFQSGLRKIEDYDYDCVLLDIMLPDGNGLNLLEQLKKMRKRENVIIISAKDSLDDKVLGLELGADDYLPKPFHLAELNARIKSVIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIELNRKEYDILLYFANRPGRLVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKMTVELast
1 -51.900PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain  ali follow..  30  1..ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM................................................................................................................. 110
2 -43.400PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase  ali follow..  15  16.VIDLMLDERADRPNISVKSFGSGAKMG-PEEIEEVVPKVADLDAAFVIFISPNPAAPGPAKARELLSA-MDVPAIIVGDKDEMNEQGLGILVKGDPMIRREFDPTEMASFNADVIKVLA--ATGAYRCVQKTLDALIAAAEAGTRDKAIAAAEFKNPYAKA----KAMAAYTIAEKVADIDVEGCFMTKDAEKYIEMIAVAAKLAAEAREIEKANDTVLRT... 255
3 -37.600PF00486.28; Q9CGU0_LACLA/149-224; Transcriptional regulatory protein, C terminal  ali follow..  26  1................................................................................................................................................GKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWG--MDFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRL... 76
4 -33.200PF16968.5; Q9HW97_PSEAE/1-133; Pilus assembly protein TadZ N-terminal  ali follow..  18  4.NFVALTQHPGELDWLQNSLASAGQVVPASASLEELLALLDVTAAGVLFISLGKSNLVSGALVEGLVSARPMLSVVAIGDGLDNQLVLAAMRAGARDFITYGARASELTGLIRRLGGRLPSVPVSAAR................................................................................................. 132
5 -28.300PF03709.15; Q92ZT9_RHIME/22-134; Orn/Lys/Arg decarboxylase, N-terminal domain  ali follow..  1.......ESNLETKRLLAHIVAENFEVELRGSYNADVS--EDASVGAYIGTVEGGRLEDRKFVRAVRDIGFRTPLWALADSHGIADAAIKMAGEVDGFVYLGQQTPAFYAQIISSLVN........................................................................................................... 112
6 -21.500PF06490.11; Q5QUH7_IDILO/6-109; Flagellar regulatory protein FleQ  ali follow..  19  2..VYLVEQQPERRQHFETVLTFIGETVEVISPSDTLKL--CAADALCVIAG------NGIENLHKLAGDAPHLPFICATDDQSNALQKA----NVIGPLEKSFDYSSLSNMLH................................................................................................................ 100
7 -7.260PF08719.11; S3CP39_OPHP1/42-216; Domain of unknown function (DUF1768 topsan)  ali follow..  16  51..............................................................................................AEQFMAGCFHDMETQRRIMAI-KEQKRLGRATRGFDAAVWDKIKSDVVVLGNINKFSQNK-DLRTLLLSTGKRPLAEAASEDRVWGIGFTEKEGENRLGKALMEVRERLA..................... 175
8 -6.020PF18743.1; A0A1J1LKF2_9CYAN/2-126; REase_AHJR-like  ali follow..  10  1ISTLTAKQEREQLLKLAENYCQKGYEIFLHPNLEELPDFLKSYRPDLIVIEVKSRASLNSYSDQYLQNLAQAV-FVMINPEDITYSPKAEYSLQKDEIESQLQVVKQLT.................................................................................................................... 125
9 -6.020PF05175.14; A6WWW0_OCHA4/169-336; Methyltransferase small domain  ali follow..  16  55.SIDLYEADYEALEAARGNLERLGASVPISFNWFDVTSEKMAGIYDTVIMN---PFHEGRVTDVSLGQAFIAAAASRLKPGGRL---VANRQLPYETTLKGLFKNVTLLEE.................................................................................................................. 161
10 -5.770PF12495.8; Q58XI2_BACTU/12-188; Vegetative insecticide protein 3A N terminal  ali follow..  15............................................................................FATGIKDIMNMIFKTDTGGDLTLDEILKNQQLLNDISGKLDGVNGSLNDLIAQGNLNTELSKEILKIANEQNQVLNDVNNKLDAINTMLRVYLPKTSMLSDVMKQNYALSLQIEYLSKQLQEISDKLDIINVNVLINS........... 153

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.