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Query: gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MKREVAKHPHVLDNNIPMFYLKTSGCCCVKHPDVFIPLFYSYHLWKMKRLSLSYLVLLSIQVLFVTFVHFENIKLast
1 -5.970d1pp9e2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  30  1.............................SHTDIKVPDFSDYRRPEVLRKGFSYLVTATTTVGVA......... 48
2 -5.410g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}  ali 3D-neighbors follow..  15  217...NLLIFPHQFIN------LRSNNSATLIVPYVNAVPMDSMVRHNNWSLVIIPVCQLSNIVPITVSISPMCAE 286
3 -5.090d2jo1a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  8....................................PFTYDYQSLQIGGLVIAGILFILGILIVLS........ 37
4 -5.000d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  132...................LCDTPGVDPKLISSVWVSNHYRWIVWKLAAMEFAFPKEFANRCLNPERVLLQ... 183
5 -4.850d3v4ka_ c.97.1.6 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  86.................TCFTSWSPCFISKNKHVSLCIKTAYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHC. 152
6 -4.590g1tme.1 b.121.4.1 (4:,2:) Theilovirus capsid proteins {Theiler`s murine encephalomyelitis virus, strain da [TaxId: 12124]}  ali 3D-neighbors follow..  18  200...QWTVYPHQILN------LRTNTTVDLEVPYVNIAPTSSWTQHANWTLVVAVFSPLQYDVQITASIQPVNPV 270
7 -4.510d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  21  9LKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDYHLRREKLAT....................... 63
8 -4.480d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  32.....................................FLFNMYLTRDRRYEVARLLNLTERQVKIWFQN..... 63
9 -4.410d2jp3a_ f.23.43.1 (A:) Sodium/potassium-transporting ATPase regulatory protein FXYD4 (CHIF) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  9....................................PFYYDWESLQLGGLIFGGLLCIAGIALALS........ 38
10 -4.400d2wdqd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  6............................................FILVRATAIVLTLYIIYMVG.......... 25

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.