current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MADVKEKINLLDVIPFRSENITAEKGSDGTVTIAFPRFKYEWMRRFLLPKGMSADIHVRLEDHGTAVWELIDGKRTVRRIIEELAEHFNYEENYESRITAYITQLQKDGFVKLVIENLast
1 -7.870d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}  ali model 3D-neighbors follow..  18  13.............................................................EVMKVIWKH--SSINTNEVIKELSKTSTWSPKT---IQTMLLRLIKKGALNHHKE. 62
2 -7.080d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  19  11.............................................................AVMDHLWSR-TEPQTVRQVHEALSAR---RDLAYTTVMAVLQRLAKKNLVLQIRDD 62
3 -7.070d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  12  17.........................................................YKITDTDVAVLLKMEKPITSEELADIFKLS-------KTTVENSLKKLIELGLVVRTKTE 72
4 -7.020d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  21  4..............................................VKVITDPEVIKVMLEDTRRKILKLLNKEMTISQLSEILGKT-------PQTIYHHIEKLKEAGLVEVKRTE 68
5 -6.650d1y0ua1 a.4.5.5 (A:1-87) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  28............................................................NPVRRKILRMLDKGRSEEEIMQTLSLS-------KKQLDYHLKVLEAGFCIERVGER 77
6 -6.640d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  19  10.............................................................DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKT---IRTLITRLYKKEIIKRYKSE 60
7 -6.330d2jsca_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  20  17..................................................................LVALLDGVCYPGQLAAHLGLT-------RSNVSNHLSCLRGCGLVVATYE. 59
8 -6.300d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  24............................................................LPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVL................. 63
9 -6.240d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  3..........................................................GLRHFSMKVCEKVQGTTSYNEVADELVSEFTNSKNIRRRVYDALNVLMAMNIISKEKKE 75
10 -6.200d1sfxa1 a.4.5.50 (A:1-106) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  21  13.......................................................EKLSFKPSDVRIYSLL-GGMRVSEIARELDLS-------ARFVRDRLKVLLKRGFVRREIVE 69

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.