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Query: gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311), from B.fragilis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKDLLYNFYKGKVSIEEGQRVKAWVEASDENERAFYRERKIFDALMLNNPLPVKKTSFFNFTHYKKIEWLKIAMTVILTFLLSYFYQEYKAGLDSVAMSTISVPEGQRTNVTLPDGSNVWLNACTTIQYPTSFNSRERFVILKGEAYFDVKKNKSRPFIVHTDAYSIEVLGTKFNVDAYPETEKFETTLMHGSVKVTLKADSSQTVILKPDHKLSLEKGRFVMTKVEDYNPYRWKEGLICFSDESFPNIMKDFEKYYGVKIVIENKNVLQINFTGKFRQTDGIDYALRILQKNIDFQYEKDNEKQIIYIKLast
1 -6.860d2vu9a1 b.29.1.6 (A:875-1079) automated matches {Clostridium botulinum [TaxId: 36826]}  ali model 3D-neighbors follow..  13  2..........................................................................................................TSILNLRYESNH---LIDLSRYASKINIGSKVNFDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFW-----IRIPKYFNSISLNNEYTIINCMENNSGWKVSLNYGEIIWTLQDTQE----IKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGNI..................... 173
2 -6.070d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}  ali model 3D-neighbors follow..  14  3..........................................................................................................GHKTQPFLHDGYAVWNTVEDSIIRTGFQGESGHDIKITAE-------NTPLPIAVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIGV--------GYQKTVDHTK--VNSKLSLFFEIK.................................................. 154
3 -6.050d1zn6a1 d.303.1.1 (A:2-219) Phage-related hypothetical protein BB1717 {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  11  64.......................................................................................................IPPGTRPEKLAEASKKNTSNARSE-TFRNAWAKAQHCI-IPADAIYE-RSGKAVPTRFTRADGAPLGIAGLWDRYRNAAGEWIDSYTM-------LTINADDDPLFRDYHQAGKEKRMVVI--LPDGAYGDWLTA----PATDTRDFLLPYP........................................................ 208
4 -6.040d2f20a1 d.303.1.1 (A:2-232) Hypothetical protein BT1218 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  15  62.......................................................................................................IPFWVRSEEDATEIRKMTLNARATIFEKPSFREMKKRCIVPSTGYFE-EGANKIPYYIYVKDEPIFSMAGIYDRWLDKDTGSIITTDTNSLTDYIDNTKHRMPAILTQEEEE------------------KWLNPSL--SKAEIASLLKPFDDAYVIRNDFLKKS........................................... 221
5 -5.950d3qhyb_ b.69.5.2 (B:) automated matches {Streptomyces exfoliatus [TaxId: 1905]}  ali model 3D-neighbors follow..  11  25...................................................................................................GVDAIAGGYFHGLALKGGKVLW-NLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVI.. 240
6 -5.910d5gzca_ b.29.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  25..............................................................................................TLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVTLINEKWGREEITYDTPFMVLKDKFQVAVNGKHTLLYGHRGPEKIDTLGIYGKVNIHSIGFSFSSDL....................................................................................................... 151
7 -5.780d5it6a_ b.29.1.0 (A:) automated matches {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  17  14..............................................................................................KKILVMGIVDLNPESFGISLTCGESEDPPADVAIELKAVFTDRQRNSCVAGEWGEEQSSIPYFPFLCEHPRFRIFVDGHQLFDFYHRIETAIDTIKINGDLQLTK................................................................................................................ 132
8 -5.730d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage Mu [TaxId: 10677]}  ali model 3D-neighbors follow..  1........................................................................................................................................NTVTLRADGRLFTGWTS---------SVTRSIESVAGYFELGVNVPPGTDLSGLAPGKFTLEIGGQI-TGYIDSRRRQMTADSMKITVAGRDKTADLI-VYSGGQWKNRTLEQIARDLCAPYGVTVRWELSDKESSA---TLDHSETVYEALVRASRARGVLMTSNAAGELVFSR 174
9 -5.670d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  10  2.......................................................................................................................................GYAVSVRVGGKEHYDIDSDFLIP----ADSFDFVIGRLGPEAAIPDLSGESCEVVIDGQIVMTGIIGSQRHGKSKGSRELSLSGRDLAGFLVDCSAPQL------NVKGMTVLDAAKKLAAPWPQIKAVVLKAENNPALG-DIEPGETVWQALTHIANSVGLHPWLEPDGTLVV.. 171
10 -5.650d4f3ja1 b.22.1.0 (A:103-243) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1..............................................................................................................................RSAFSAKRSESRVPPPSDAPLPFDVLVNEQGHYDAVTGKFTCQVPGVYFAVHATVYRASLQFDLVKNGESIASSLSGGAMVRLEPEDQVWVQVGVGDYIGIASIKTDSTFSGFLVYSDWHSSPVF............................................................ 140

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.